Wall clock time and date at job start Mon Mar 30 2020 05:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86791 * 119.99939 * 2 1 4 4 H 1.48505 * 109.47156 * 240.00141 * 3 2 1 5 5 H 1.48502 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47324 * 120.00098 * 3 2 1 7 7 C 1.40130 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99580 * 180.02562 * 7 2 1 9 9 C 1.39925 * 120.00221 * 359.97438 * 7 2 1 10 10 C 1.36976 * 124.83914 * 179.97438 * 9 7 2 11 11 C 1.39771 * 115.03112 * 180.02562 * 10 9 7 12 12 C 1.42073 * 128.46292 * 179.97438 * 11 10 9 13 13 C 1.35860 * 120.59979 * 179.97438 * 12 11 10 14 14 C 1.39161 * 120.66224 * 0.28074 * 13 12 11 15 15 F 1.35092 * 119.94074 * 179.72203 * 14 13 12 16 16 C 1.38337 * 120.11748 * 359.48293 * 14 13 12 17 17 O 1.36030 * 119.90460 * 180.25486 * 16 14 13 18 18 C 1.39927 * 120.18714 * 0.49524 * 16 14 13 19 19 S 1.75459 * 124.84422 * 359.97438 * 9 7 2 20 20 H 0.97004 * 120.00118 * 0.02562 * 1 2 3 21 21 H 1.08004 * 122.48220 * 0.04159 * 10 9 7 22 22 H 1.08007 * 119.70098 * 359.97438 * 12 11 10 23 23 H 1.08002 * 119.66660 * 179.97438 * 13 12 11 24 24 H 0.96701 * 113.99962 * 270.23152 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6964 -1.2126 5 1 1.2769 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0085 -1.2136 -0.0005 8 1 3.0886 -1.2136 -0.0001 9 6 1.3088 -2.4254 -0.0005 10 6 1.8912 -3.6652 -0.0015 11 6 0.9963 -4.7389 -0.0019 12 6 1.2850 -6.1299 -0.0034 13 6 0.2806 -7.0448 -0.0030 14 6 -1.0501 -6.6376 -0.0070 15 9 -2.0373 -7.5598 -0.0122 16 6 -1.3638 -5.2903 -0.0006 17 8 -2.6661 -4.8972 0.0007 18 6 -0.3454 -4.3308 -0.0006 19 16 -0.4395 -2.5735 0.0007 20 1 -0.4850 0.8401 -0.0004 21 1 2.9624 -3.8029 -0.0018 22 1 2.3124 -6.4632 -0.0049 23 1 0.5173 -8.0985 -0.0046 24 1 -3.0433 -4.7827 -0.8824 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307692404.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:28 Heat of formation + Delta-G solvation = -92.060098 kcal Electronic energy + Delta-G solvation = -13923.443017 eV Core-core repulsion = 11226.874837 eV Total energy + Delta-G solvation = -2696.568179 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.60561 -40.23392 -38.12534 -36.55840 -34.63173 -30.88339 -30.35031 -27.11825 -24.38289 -23.28341 -21.33379 -20.08422 -18.94975 -18.37627 -17.60438 -16.86834 -16.56731 -16.26534 -15.76714 -15.02771 -14.82985 -14.47463 -13.99976 -13.97168 -13.61776 -13.08945 -13.03837 -12.72107 -12.08852 -12.00612 -11.88658 -11.57912 -11.03557 -10.97045 -10.19606 -9.22502 -8.97446 -8.32446 -6.61412 0.04051 0.43436 1.23247 1.29605 1.37270 1.53766 1.75978 1.84330 2.12263 2.68175 3.08892 3.22459 3.65135 4.10079 4.39257 4.60542 4.80032 4.85895 5.13002 5.24000 5.39501 5.42409 5.54984 5.84692 5.97082 6.08982 6.38457 6.47866 6.76047 7.89391 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.052438 B = 0.007262 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.840601 B = 3854.623834 C = 4376.097480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.015 3.985 3 Si 1.016 2.984 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.254 1.254 7 C -0.399 4.399 8 H 0.110 0.890 9 C 0.022 3.978 10 C -0.384 4.384 11 C 0.003 3.997 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.025 4.025 15 F -0.150 7.150 16 C 0.129 3.871 17 O -0.501 6.501 18 C -0.306 4.306 19 S 0.148 5.852 20 H 0.315 0.685 21 H 0.116 0.884 22 H 0.144 0.856 23 H 0.158 0.842 24 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -0.720 -1.722 2.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.205 4.205 3 Si 0.834 3.166 4 H -0.176 1.176 5 H -0.185 1.185 6 H -0.178 1.178 7 C -0.433 4.433 8 H 0.128 0.872 9 C -0.098 4.098 10 C -0.408 4.408 11 C -0.005 4.005 12 C -0.154 4.154 13 C -0.133 4.133 14 C -0.047 4.047 15 F -0.130 7.130 16 C 0.079 3.921 17 O -0.313 6.313 18 C -0.421 4.421 19 S 0.408 5.592 20 H 0.129 0.871 21 H 0.134 0.866 22 H 0.161 0.839 23 H 0.176 0.824 24 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.428 0.392 -1.117 1.259 hybrid contribution 0.998 -0.641 -0.469 1.276 sum 0.570 -0.248 -1.586 1.704 Atomic orbital electron populations 1.68630 1.09250 1.33046 1.31151 1.27379 0.95866 1.06223 0.91000 0.84680 0.78370 0.72903 0.80691 1.17622 1.18452 1.17775 1.19764 0.96580 0.89156 1.37751 0.87195 1.21925 0.95687 0.96969 0.95221 1.19773 0.98360 0.90151 1.32530 1.18288 0.91221 0.94694 0.96323 1.20751 0.99759 0.90047 1.04883 1.20530 0.89470 1.01292 1.02018 1.17616 0.86064 0.84472 1.16545 1.91353 1.61295 1.65044 1.95263 1.17643 0.82945 0.89228 1.02278 1.84747 1.22131 1.89808 1.34623 1.23968 0.96384 1.02923 1.18860 1.84779 1.04663 0.91229 1.78533 0.87114 0.86600 0.83869 0.82432 0.74215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.95 10.58 21.86 0.23 -35.71 14 2 C 0.02 0.65 5.50 85.31 0.47 1.12 14 3 Si 1.02 31.90 29.56 68.60 2.03 33.93 14 4 H -0.25 -7.67 7.11 99.48 0.71 -6.96 14 5 H -0.26 -7.67 7.11 99.48 0.71 -6.96 14 6 H -0.25 -7.78 7.11 99.48 0.71 -7.07 14 7 C -0.40 -19.11 9.26 23.14 0.21 -18.89 14 8 H 0.11 4.87 7.85 -2.91 -0.02 4.85 14 9 C 0.02 1.11 6.11 22.38 0.14 1.25 14 10 C -0.38 -19.12 10.14 22.34 0.23 -18.89 14 11 C 0.00 0.14 5.85 -21.47 -0.13 0.02 14 12 C -0.13 -5.34 10.03 22.67 0.23 -5.11 14 13 C -0.11 -4.13 9.92 21.94 0.22 -3.91 14 14 C -0.03 -1.05 7.31 22.52 0.16 -0.88 14 15 F -0.15 -5.90 17.09 44.97 0.77 -5.13 14 16 C 0.13 5.76 6.73 22.70 0.15 5.92 14 17 O -0.50 -20.32 13.33 -93.90 -1.25 -21.57 14 18 C -0.31 -14.94 6.42 23.17 0.15 -14.79 14 19 S 0.15 7.39 20.09 -56.49 -1.14 6.25 14 20 H 0.32 12.55 8.30 -92.71 -0.77 11.79 14 21 H 0.12 5.41 8.06 -2.91 -0.02 5.39 14 22 H 0.14 4.75 8.06 -2.91 -0.02 4.72 14 23 H 0.16 4.51 8.06 -2.91 -0.02 4.49 14 24 H 0.40 12.24 9.07 -74.06 -0.67 11.56 14 Total: -1.00 -57.66 238.65 3.06 -54.60 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.59 Total: 21.80 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 1.83 Total: -54.17 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.23 Total: -35.71 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.25 Total: -21.57 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.77 Total: -5.13 kcal Atomic # 14 Polarization: 31.90 SS G_CDS: 2.03 Total: 33.93 kcal Atomic # 16 Polarization: 7.39 SS G_CDS: -1.14 Total: 6.25 kcal Total: -57.66 3.06 -54.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307692404.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.464 kcal (2) G-P(sol) polarization free energy of solvation -57.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds