Wall clock time and date at job start Mon Mar 30 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35744 * 116.99583 * 2 1 4 4 C 1.39141 * 119.85082 * 359.97079 * 3 2 1 5 5 C 1.36523 * 120.30345 * 180.02562 * 4 3 2 6 6 C 1.40500 * 119.97964 * 359.72389 * 5 4 3 7 7 C 1.46151 * 120.14677 * 180.27668 * 6 5 4 8 8 C 1.38261 * 120.00113 * 30.24729 * 7 6 5 9 9 C 1.38779 * 120.00189 * 7.59754 * 8 7 6 10 10 H 1.07997 * 120.00201 * 14.83012 * 9 8 7 11 11 C 1.40588 * 119.99807 * 194.83514 * 9 8 7 12 12 N 1.30588 * 120.00385 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99895 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47051 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47189 * 119.99898 * 13 11 9 16 16 H 1.48496 * 109.47002 * 240.00284 * 13 11 9 17 17 C 1.40481 * 119.69561 * 0.57812 * 6 5 4 18 18 C 1.37655 * 119.70951 * 359.42290 * 17 6 5 19 19 Cl 1.73598 * 119.99948 * 180.25978 * 18 17 6 20 20 H 1.09003 * 109.47152 * 60.00673 * 1 2 3 21 21 H 1.09008 * 109.46896 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47554 * 300.00022 * 1 2 3 23 23 H 1.07997 * 119.84817 * 0.03032 * 4 3 2 24 24 H 1.07991 * 120.01299 * 179.97438 * 5 4 3 25 25 H 1.08002 * 119.99488 * 210.24587 * 7 6 5 26 26 H 1.08005 * 119.99819 * 187.59689 * 8 7 6 27 27 H 0.96996 * 120.00642 * 179.97438 * 12 11 9 28 28 H 1.08000 * 120.14564 * 179.69976 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2843 2.3744 -0.0006 5 6 1.8943 3.5958 -0.0011 6 6 3.2968 3.6800 0.0048 7 6 3.9537 4.9855 0.0103 8 6 3.3380 6.0667 0.6133 9 6 2.1753 5.8821 1.3482 10 1 1.8809 4.8886 1.6528 11 6 1.3806 6.9884 1.6962 12 7 1.7366 8.1897 1.3283 13 14 -0.1849 6.7398 2.6847 14 1 -0.3635 5.2942 2.9738 15 1 -0.0888 7.4922 3.9614 16 1 -1.3470 7.2353 1.9043 17 6 4.0647 2.5036 -0.0011 18 6 3.4364 1.2788 -0.0005 19 17 4.3779 -0.1797 -0.0009 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.2061 2.3122 -0.0006 24 1 1.2992 4.4969 -0.0020 25 1 4.9201 5.1057 -0.4566 26 1 3.7619 7.0549 0.5125 27 1 1.1882 8.9530 1.5680 28 1 5.1432 2.5599 -0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308442381.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:37 Heat of formation + Delta-G solvation = -33.249143 kcal Electronic energy + Delta-G solvation = -14157.451828 eV Core-core repulsion = 11584.850481 eV Total energy + Delta-G solvation = -2572.601346 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83639 -38.52253 -37.35231 -36.19839 -33.55595 -31.73999 -30.12538 -28.06583 -26.91315 -23.49845 -23.01780 -20.78994 -19.41480 -18.46586 -17.08844 -17.01462 -16.55026 -16.07214 -15.34263 -14.95951 -14.69264 -14.31498 -14.08784 -13.81531 -13.12815 -13.10712 -12.81022 -12.46307 -12.37084 -12.13485 -11.92718 -11.73933 -11.59734 -11.37260 -11.15415 -10.12023 -9.59681 -8.92245 -8.63027 -6.30683 0.40561 0.48504 1.25743 1.32774 1.37216 1.53119 1.89174 2.14055 2.50918 2.91730 3.40387 3.99763 4.20683 4.46930 4.51019 4.62507 4.64302 4.75518 4.80626 5.02675 5.03717 5.13241 5.41882 5.48531 5.73055 5.91243 6.08213 6.25954 6.45421 6.59743 6.85912 7.02240 8.11236 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.007256 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.951607 B = 3857.691493 C = 4627.803818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.067 3.933 4 C -0.179 4.179 5 C -0.121 4.121 6 C 0.015 3.985 7 C -0.424 4.424 8 C 0.056 3.944 9 C -0.448 4.448 10 H 0.093 0.907 11 C 0.033 3.967 12 N -0.818 5.818 13 Si 0.982 3.018 14 H -0.253 1.253 15 H -0.261 1.261 16 H -0.257 1.257 17 C -0.142 4.142 18 C -0.057 4.057 19 Cl -0.074 7.074 20 H 0.060 0.940 21 H 0.121 0.879 22 H 0.058 0.942 23 H 0.150 0.850 24 H 0.135 0.865 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.300 0.700 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 -9.139 0.040 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C 0.021 3.979 4 C -0.197 4.197 5 C -0.139 4.139 6 C 0.014 3.986 7 C -0.445 4.445 8 C 0.034 3.966 9 C -0.475 4.475 10 H 0.111 0.889 11 C -0.186 4.186 12 N -0.442 5.442 13 Si 0.801 3.199 14 H -0.176 1.176 15 H -0.185 1.185 16 H -0.181 1.181 17 C -0.161 4.161 18 C -0.084 4.084 19 Cl -0.046 7.046 20 H 0.079 0.921 21 H 0.139 0.861 22 H 0.076 0.924 23 H 0.168 0.832 24 H 0.153 0.847 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.779 -9.181 0.043 10.848 hybrid contribution -0.163 0.471 0.236 0.552 sum -5.942 -8.710 0.279 10.547 Atomic orbital electron populations 1.23283 0.76988 1.05263 1.01890 1.85987 1.22908 1.25784 1.89485 1.18643 0.90138 0.85323 1.03789 1.20996 1.00514 0.91074 1.07136 1.21469 0.94854 0.97760 0.99845 1.18885 0.92625 0.92599 0.94451 1.20967 1.04364 0.93400 1.25786 1.20516 0.92853 0.94357 0.88824 1.20183 1.06231 0.95391 1.25683 0.88875 1.27256 1.03159 0.93748 0.94426 1.69553 1.38375 1.00872 1.35350 0.85136 0.76069 0.80495 0.78216 1.17604 1.18531 1.18098 1.21034 0.99768 0.89547 1.05755 1.20067 0.88910 0.87581 1.11848 1.98283 1.72434 1.36523 1.97345 0.92095 0.86056 0.92361 0.83245 0.84747 0.90543 0.91484 0.88854 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.80 113.37 1.11 1.55 15 2 O -0.33 -10.60 9.94 -90.68 -0.90 -11.50 15 3 C 0.07 2.49 6.70 22.74 0.15 2.64 15 4 C -0.18 -6.60 8.96 22.09 0.20 -6.40 15 5 C -0.12 -5.24 7.48 22.42 0.17 -5.07 15 6 C 0.02 0.71 5.48 -20.13 -0.11 0.60 15 7 C -0.42 -21.39 9.98 24.33 0.24 -21.15 15 8 C 0.06 2.92 9.35 22.40 0.21 3.13 15 9 C -0.45 -22.36 6.59 22.97 0.15 -22.21 15 10 H 0.09 4.60 5.29 -2.91 -0.02 4.59 15 11 C 0.03 1.53 5.51 85.45 0.47 2.00 15 12 N -0.82 -39.21 12.90 21.95 0.28 -38.92 15 13 Si 0.98 34.47 29.57 68.60 2.03 36.50 15 14 H -0.25 -8.79 7.11 99.48 0.71 -8.09 15 15 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 16 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 17 C -0.14 -6.04 9.59 22.68 0.22 -5.82 15 18 C -0.06 -2.25 6.33 22.39 0.14 -2.11 15 19 Cl -0.07 -2.56 28.49 -2.72 -0.08 -2.64 15 20 H 0.06 1.23 7.65 -2.39 -0.02 1.21 15 21 H 0.12 1.93 8.14 -2.38 -0.02 1.91 15 22 H 0.06 1.21 7.65 -2.39 -0.02 1.19 15 23 H 0.15 4.46 6.26 -2.91 -0.02 4.44 15 24 H 0.13 6.04 5.73 -2.92 -0.02 6.02 15 25 H 0.08 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.07 3.65 7.50 -2.91 -0.02 3.63 15 27 H 0.30 12.71 8.29 -92.71 -0.77 11.94 15 28 H 0.13 5.11 8.06 -2.91 -0.02 5.09 15 Total: -1.00 -55.05 260.63 5.46 -49.59 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.18 Total: 19.80 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 2.95 Total: -52.84 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.28 Total: -38.92 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.90 Total: -11.50 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.64 kcal Total: -55.05 5.46 -49.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308442381.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.340 kcal (2) G-P(sol) polarization free energy of solvation -55.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds