Wall clock time and date at job start Mon Mar 30 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48496 * 109.47210 * 275.40936 * 3 2 1 5 5 H 1.48491 * 109.47395 * 35.41335 * 3 2 1 6 6 H 1.48504 * 109.47012 * 155.41569 * 3 2 1 7 7 C 1.39948 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00283 * 341.71199 * 7 2 1 9 9 C 1.41398 * 119.99920 * 161.71366 * 7 2 1 10 10 C 1.40736 * 120.24437 * 150.47244 * 9 7 2 11 11 C 1.37593 * 119.74731 * 180.27758 * 10 9 7 12 12 C 1.38654 * 120.24658 * 359.49934 * 11 10 9 13 13 C 1.38616 * 120.50226 * 0.23446 * 12 11 10 14 14 C 1.50703 * 119.87800 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47472 * 89.99802 * 14 13 12 16 16 H 1.08997 * 109.46606 * 55.00100 * 15 14 13 17 17 Cl 1.80299 * 109.46855 * 295.00439 * 15 14 13 18 18 C 1.50693 * 109.47055 * 175.00113 * 15 14 13 19 19 O 1.20759 * 119.99762 * 120.00428 * 18 15 14 20 20 C 1.37636 * 120.24713 * 0.02562 * 13 12 11 21 21 H 0.96999 * 119.99461 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.12574 * 0.03712 * 10 9 7 23 23 H 1.08000 * 119.87608 * 179.78005 * 11 10 9 24 24 H 1.08003 * 119.75017 * 180.25436 * 12 11 10 25 25 H 1.09002 * 109.47120 * 210.00490 * 14 13 12 26 26 H 1.08997 * 109.46861 * 329.99440 * 14 13 12 27 27 H 1.07993 * 120.00297 * 299.99739 * 18 15 14 28 28 H 1.08006 * 120.12962 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8112 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5089 -2.1238 0.2925 9 6 3.3684 -1.2428 -0.3848 10 6 4.2363 -2.2091 0.1571 11 6 5.5595 -2.2261 -0.2197 12 6 6.0364 -1.3026 -1.1373 13 6 5.1894 -0.3498 -1.6817 14 6 5.7225 0.6469 -2.6784 15 6 5.5789 0.0809 -4.0926 16 1 4.5397 -0.1968 -4.2689 17 17 6.6278 -1.3753 -4.2664 18 6 5.9973 1.1242 -5.0961 19 8 6.9130 0.9024 -5.8515 20 6 3.8632 -0.3108 -1.3153 21 1 -0.4849 0.8401 -0.0004 22 1 3.8660 -2.9321 0.8689 23 1 6.2282 -2.9645 0.1975 24 1 7.0756 -1.3258 -1.4305 25 1 5.1584 1.5764 -2.6000 26 1 6.7745 0.8418 -2.4701 27 1 5.4783 2.0703 -5.1399 28 1 3.2050 0.4326 -1.7404 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313472198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:16 Heat of formation + Delta-G solvation = -36.234632 kcal Electronic energy + Delta-G solvation = -14274.963167 eV Core-core repulsion = 11702.232361 eV Total energy + Delta-G solvation = -2572.730807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.30655 -38.05763 -35.75174 -33.98009 -33.02238 -30.37312 -29.22440 -25.20954 -24.70129 -21.42565 -21.12237 -19.68345 -17.40673 -16.73054 -15.92286 -15.45366 -14.87540 -14.63098 -14.20319 -13.56433 -13.35928 -12.91325 -12.71814 -12.24901 -11.87077 -11.46202 -11.34069 -10.85262 -10.77784 -10.57646 -10.30251 -10.22731 -9.90300 -9.73158 -9.48846 -9.16750 -7.67380 -7.60347 -6.96763 -4.50736 1.74798 2.30017 2.50023 2.65334 3.01998 3.15949 3.26886 3.93324 3.99731 4.42501 4.95266 5.01998 5.15266 5.39993 5.58919 5.65633 5.97938 6.07284 6.29035 6.52423 6.69716 6.90979 7.12848 7.16413 7.36995 7.60782 7.73449 7.83620 8.09963 8.33166 8.63934 8.78104 10.06366 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.008438 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.331740 B = 3317.640420 C = 3930.141876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.084 3.916 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.452 4.452 8 H 0.089 0.911 9 C 0.092 3.908 10 C -0.204 4.204 11 C -0.088 4.088 12 C -0.215 4.215 13 C -0.057 4.057 14 C -0.073 4.073 15 C -0.071 4.071 16 H 0.132 0.868 17 Cl -0.147 7.147 18 C 0.339 3.661 19 O -0.439 6.439 20 C -0.229 4.229 21 H 0.284 0.716 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 4.294 -5.347 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.481 4.481 8 H 0.107 0.893 9 C 0.089 3.911 10 C -0.223 4.223 11 C -0.106 4.106 12 C -0.234 4.234 13 C -0.057 4.057 14 C -0.110 4.110 15 C -0.116 4.116 16 H 0.149 0.851 17 Cl -0.121 7.121 18 C 0.192 3.808 19 O -0.308 6.308 20 C -0.248 4.248 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.489 4.146 -5.761 10.318 hybrid contribution -0.013 0.606 0.139 0.622 sum 7.475 4.752 -5.622 10.491 Atomic orbital electron populations 1.69705 1.08084 1.30115 1.35714 1.26134 0.94664 1.01616 0.90998 0.86348 0.81468 0.79946 0.78664 1.19747 1.21924 1.16671 1.19471 0.93251 0.96090 1.39259 0.89283 1.17678 0.92953 0.90864 0.89581 1.21069 0.93121 1.03745 1.04364 1.20642 0.95359 0.97487 0.97123 1.20261 0.98130 1.00453 1.04537 1.19040 0.93984 0.95956 0.96767 1.20688 1.02500 0.98183 0.89676 1.25166 0.99321 0.88322 0.98763 0.85071 1.98727 1.71080 1.44117 1.98154 1.26279 0.82641 0.91493 0.80359 1.90434 1.24860 1.79628 1.35847 1.20853 0.94556 1.05027 1.04394 0.90555 0.88330 0.88850 0.88731 0.89701 0.90253 0.86882 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.17 13.93 55.55 0.77 -20.39 15 2 C 0.08 2.14 5.40 -17.34 -0.09 2.05 15 3 Si 0.91 19.76 24.52 -169.99 -4.17 15.59 15 4 H -0.27 -5.49 6.71 56.52 0.38 -5.11 15 5 H -0.29 -6.20 7.11 56.52 0.40 -5.79 15 6 H -0.24 -5.44 6.86 56.52 0.39 -5.05 15 7 C -0.45 -11.93 9.57 -37.74 -0.36 -12.29 15 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 15 9 C 0.09 2.25 5.11 -106.82 -0.55 1.70 15 10 C -0.20 -4.63 9.80 -38.87 -0.38 -5.01 15 11 C -0.09 -1.81 10.02 -39.66 -0.40 -2.20 15 12 C -0.21 -4.24 8.69 -39.29 -0.34 -4.58 15 13 C -0.06 -1.12 4.88 -104.70 -0.51 -1.63 15 14 C -0.07 -1.08 4.88 -27.88 -0.14 -1.22 15 15 C -0.07 -0.97 3.29 -27.89 -0.09 -1.06 15 16 H 0.13 1.73 8.14 -51.93 -0.42 1.31 15 17 Cl -0.15 -2.38 26.34 -51.86 -1.37 -3.75 15 18 C 0.34 3.86 11.12 36.00 0.40 4.26 15 19 O -0.44 -6.52 16.83 6.00 0.10 -6.42 15 20 C -0.23 -5.09 6.82 -38.87 -0.27 -5.36 15 21 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 22 H 0.10 2.14 8.06 -52.48 -0.42 1.72 15 23 H 0.09 1.68 8.06 -52.49 -0.42 1.25 15 24 H 0.09 1.72 7.88 -52.48 -0.41 1.31 15 25 H 0.08 1.10 8.08 -51.93 -0.42 0.68 15 26 H 0.08 1.10 8.08 -51.93 -0.42 0.68 15 27 H 0.12 0.81 8.06 -52.49 -0.42 0.39 15 28 H 0.10 2.16 4.73 -52.48 -0.25 1.91 15 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -28.43 259.30 -6.26 -34.69 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.79 Total: 1.72 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -2.72 Total: -25.35 kcal Atomic # 7 Polarization: -21.17 SS G_CDS: 0.77 Total: -20.39 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: 0.10 Total: -6.42 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.17 Total: 15.59 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -1.37 Total: -3.75 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.43 -6.26 -34.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.543 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds