Wall clock time and date at job start Mon Mar 30 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48496 * 109.47210 * 275.40936 * 3 2 1 5 5 H 1.48491 * 109.47395 * 35.41335 * 3 2 1 6 6 H 1.48504 * 109.47012 * 155.41569 * 3 2 1 7 7 C 1.39948 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00283 * 341.71199 * 7 2 1 9 9 C 1.41398 * 119.99920 * 161.71366 * 7 2 1 10 10 C 1.40736 * 120.24437 * 150.47244 * 9 7 2 11 11 C 1.37593 * 119.74731 * 180.27758 * 10 9 7 12 12 C 1.38654 * 120.24658 * 359.49934 * 11 10 9 13 13 C 1.38616 * 120.50226 * 0.23446 * 12 11 10 14 14 C 1.50703 * 119.87800 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47472 * 89.99802 * 14 13 12 16 16 H 1.08997 * 109.46606 * 55.00100 * 15 14 13 17 17 Cl 1.80299 * 109.46855 * 295.00439 * 15 14 13 18 18 C 1.50693 * 109.47055 * 175.00113 * 15 14 13 19 19 O 1.20759 * 119.99762 * 120.00428 * 18 15 14 20 20 C 1.37636 * 120.24713 * 0.02562 * 13 12 11 21 21 H 0.96999 * 119.99461 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.12574 * 0.03712 * 10 9 7 23 23 H 1.08000 * 119.87608 * 179.78005 * 11 10 9 24 24 H 1.08003 * 119.75017 * 180.25436 * 12 11 10 25 25 H 1.09002 * 109.47120 * 210.00490 * 14 13 12 26 26 H 1.08997 * 109.46861 * 329.99440 * 14 13 12 27 27 H 1.07993 * 120.00297 * 299.99739 * 18 15 14 28 28 H 1.08006 * 120.12962 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6169 0.8112 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5089 -2.1238 0.2925 9 6 3.3684 -1.2428 -0.3848 10 6 4.2363 -2.2091 0.1571 11 6 5.5595 -2.2261 -0.2197 12 6 6.0364 -1.3026 -1.1373 13 6 5.1894 -0.3498 -1.6817 14 6 5.7225 0.6469 -2.6784 15 6 5.5789 0.0809 -4.0926 16 1 4.5397 -0.1968 -4.2689 17 17 6.6278 -1.3753 -4.2664 18 6 5.9973 1.1242 -5.0961 19 8 6.9130 0.9024 -5.8515 20 6 3.8632 -0.3108 -1.3153 21 1 -0.4849 0.8401 -0.0004 22 1 3.8660 -2.9321 0.8689 23 1 6.2282 -2.9645 0.1975 24 1 7.0756 -1.3258 -1.4305 25 1 5.1584 1.5764 -2.6000 26 1 6.7745 0.8418 -2.4701 27 1 5.4783 2.0703 -5.1399 28 1 3.2050 0.4326 -1.7404 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313472198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:16 Heat of formation + Delta-G solvation = -52.800361 kcal Electronic energy + Delta-G solvation = -14275.681511 eV Core-core repulsion = 11702.232361 eV Total energy + Delta-G solvation = -2573.449151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35657 -39.63827 -36.93076 -35.65703 -34.49997 -32.14517 -30.64876 -27.02804 -25.96503 -23.11061 -22.14338 -21.26941 -19.22464 -17.69780 -17.53989 -16.64073 -16.39333 -16.04736 -15.62896 -15.10346 -14.78198 -14.37202 -14.07243 -13.87372 -13.48695 -13.12379 -12.70214 -12.49265 -12.38396 -11.97675 -11.75871 -11.61619 -11.45702 -11.34005 -10.91794 -10.61736 -9.39271 -9.31013 -8.83715 -6.45684 0.73558 0.90870 0.98478 1.23996 1.28809 1.47133 1.55834 2.17731 2.64494 3.09930 3.50183 3.91809 3.96967 4.24399 4.35292 4.43299 4.55039 4.63934 4.83753 4.89222 4.99847 5.18042 5.40592 5.65958 5.89796 5.93559 6.09247 6.29269 6.31652 6.45357 6.81348 6.88692 8.25610 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.008438 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.331740 B = 3317.640420 C = 3930.141876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.044 3.956 3 Si 0.964 3.036 4 H -0.237 1.237 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.493 4.493 8 H 0.046 0.954 9 C 0.070 3.930 10 C -0.226 4.226 11 C -0.090 4.090 12 C -0.203 4.203 13 C -0.054 4.054 14 C -0.072 4.072 15 C -0.074 4.074 16 H 0.136 0.864 17 Cl -0.177 7.177 18 C 0.356 3.644 19 O -0.475 6.475 20 C -0.233 4.233 21 H 0.292 0.708 22 H 0.092 0.908 23 H 0.120 0.880 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.175 0.825 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.349 6.711 -6.747 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.169 4.169 3 Si 0.786 3.214 4 H -0.161 1.161 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.523 4.523 8 H 0.065 0.935 9 C 0.068 3.932 10 C -0.245 4.245 11 C -0.108 4.108 12 C -0.222 4.222 13 C -0.054 4.054 14 C -0.109 4.109 15 C -0.119 4.119 16 H 0.153 0.847 17 Cl -0.151 7.151 18 C 0.212 3.788 19 O -0.345 6.345 20 C -0.252 4.252 21 H 0.103 0.897 22 H 0.111 0.889 23 H 0.138 0.862 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.113 0.887 27 H 0.190 0.810 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.653 6.551 -7.171 13.694 hybrid contribution -0.555 -0.268 0.578 0.845 sum 9.098 6.283 -6.593 12.873 Atomic orbital electron populations 1.69748 1.09439 1.31394 1.37859 1.26903 0.95313 1.04445 0.90226 0.85519 0.79435 0.75932 0.80492 1.16071 1.21205 1.17617 1.19452 0.94810 0.95483 1.42553 0.93549 1.17845 0.92337 0.92408 0.90603 1.21213 0.94321 1.03908 1.05105 1.20976 0.94637 0.98182 0.96974 1.20686 0.99285 0.99318 1.02922 1.19487 0.92766 0.96377 0.96759 1.20754 1.03669 0.97871 0.88643 1.25471 0.99240 0.87968 0.99189 0.84664 1.98730 1.71937 1.46226 1.98212 1.26811 0.81716 0.91983 0.78337 1.90452 1.26744 1.80177 1.37177 1.20988 0.95933 1.04527 1.03772 0.89738 0.88944 0.86161 0.86455 0.86642 0.88724 0.80983 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.36 13.93 21.83 0.30 -46.06 15 2 C 0.04 2.32 5.40 85.26 0.46 2.78 15 3 Si 0.96 39.58 24.52 68.60 1.68 41.26 15 4 H -0.24 -8.33 6.71 99.48 0.67 -7.66 15 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 15 6 H -0.25 -10.62 6.86 99.48 0.68 -9.94 15 7 C -0.49 -27.43 9.57 23.46 0.22 -27.20 15 8 H 0.05 2.84 8.06 -2.91 -0.02 2.81 15 9 C 0.07 3.48 5.11 -21.29 -0.11 3.37 15 10 C -0.23 -10.41 9.80 22.73 0.22 -10.19 15 11 C -0.09 -3.52 10.02 22.22 0.22 -3.30 15 12 C -0.20 -7.37 8.69 22.46 0.20 -7.18 15 13 C -0.05 -1.91 4.88 -19.92 -0.10 -2.01 15 14 C -0.07 -1.77 4.88 29.85 0.15 -1.62 15 15 C -0.07 -1.72 3.29 29.85 0.10 -1.62 15 16 H 0.14 3.05 8.14 -2.39 -0.02 3.03 15 17 Cl -0.18 -5.26 26.34 -2.72 -0.07 -5.34 15 18 C 0.36 6.32 11.12 71.23 0.79 7.11 15 19 O -0.48 -12.41 16.83 -1.45 -0.02 -12.43 15 20 C -0.23 -9.90 6.82 22.73 0.15 -9.75 15 21 H 0.29 14.10 8.30 -92.71 -0.77 13.33 15 22 H 0.09 4.22 8.06 -2.91 -0.02 4.19 15 23 H 0.12 4.02 8.06 -2.91 -0.02 3.99 15 24 H 0.12 3.77 7.88 -2.91 -0.02 3.75 15 25 H 0.12 2.22 8.08 -2.39 -0.02 2.20 15 26 H 0.09 2.10 8.08 -2.39 -0.02 2.08 15 27 H 0.17 1.22 8.06 -2.91 -0.02 1.20 15 28 H 0.11 4.30 4.73 -2.91 -0.01 4.29 15 Total: -1.00 -64.75 259.30 5.30 -59.45 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.10 Total: 12.71 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 2.31 Total: -49.59 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.30 Total: -46.06 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.02 Total: -12.43 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.68 Total: 41.26 kcal Atomic # 17 Polarization: -5.26 SS G_CDS: -0.07 Total: -5.34 kcal Total: -64.75 5.30 -59.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313472198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.646 kcal (2) G-P(sol) polarization free energy of solvation -64.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds