Wall clock time and date at job start Mon Mar 30 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35704 * 117.00011 * 2 1 4 4 C 1.38445 * 120.17051 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.16785 * 180.02562 * 4 3 2 6 6 C 1.38830 * 120.51155 * 0.02562 * 5 4 3 7 7 Cl 1.73596 * 119.82734 * 179.97438 * 6 5 4 8 8 C 1.37698 * 120.33879 * 359.97438 * 6 5 4 9 9 C 1.40410 * 119.82611 * 0.27908 * 8 6 5 10 10 C 1.41833 * 120.25279 * 179.69721 * 9 8 6 11 11 C 1.38304 * 120.00043 * 320.74710 * 10 9 8 12 12 C 1.38768 * 119.99749 * 352.77312 * 11 10 9 13 13 H 1.08002 * 119.99992 * 348.45026 * 12 11 10 14 14 C 1.40592 * 119.99863 * 168.45627 * 12 11 10 15 15 N 1.30589 * 120.00425 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00238 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46938 * 89.99728 * 16 14 12 18 18 H 1.48501 * 109.47308 * 210.00073 * 16 14 12 19 19 H 1.48501 * 109.47131 * 330.00116 * 16 14 12 20 20 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47205 * 300.00164 * 1 2 3 22 22 H 1.08999 * 109.46786 * 60.00602 * 1 2 3 23 23 H 1.07998 * 119.91700 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.74763 * 179.97438 * 5 4 3 25 25 H 1.08007 * 120.08881 * 180.02562 * 8 6 5 26 26 H 1.07998 * 119.99972 * 140.74319 * 10 9 8 27 27 H 1.07995 * 120.00109 * 172.77010 * 11 10 9 28 28 H 0.96994 * 120.00198 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2946 2.3725 -0.0005 5 6 1.9223 3.6042 -0.0011 6 6 3.3080 3.6892 -0.0016 7 17 4.0776 5.2452 -0.0030 8 6 4.0749 2.5456 -0.0011 9 6 3.4523 1.2871 -0.0059 10 6 4.2335 0.1033 -0.0119 11 6 5.3877 0.0403 -0.7713 12 6 5.7029 1.0742 -1.6415 13 1 4.9681 1.8327 -1.8677 14 6 6.9788 1.1342 -2.2289 15 7 7.8675 0.2174 -1.9552 16 14 7.4031 2.5256 -3.4010 17 1 7.9752 3.6615 -2.6344 18 1 8.3972 2.0490 -4.3959 19 1 6.1739 2.9723 -4.1045 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 0.2160 2.3176 -0.0005 24 1 1.3301 4.5074 -0.0019 25 1 5.1527 2.6164 -0.0011 26 1 3.9270 -0.7488 0.5765 27 1 6.0436 -0.8134 -0.6869 28 1 8.7479 0.2590 -2.3602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379488908.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:15 Heat of formation + Delta-G solvation = -37.372301 kcal Electronic energy + Delta-G solvation = -14302.488319 eV Core-core repulsion = 11729.708180 eV Total energy + Delta-G solvation = -2572.780140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83516 -38.45152 -37.19532 -36.31232 -34.14051 -30.70275 -30.59062 -27.93539 -27.21845 -23.73547 -22.72762 -20.82989 -19.37961 -18.22332 -17.11318 -17.08513 -16.45992 -16.25620 -15.35032 -15.14074 -14.64366 -14.39198 -13.97847 -13.53601 -13.12262 -13.09883 -12.87681 -12.67570 -12.38810 -12.16159 -11.89040 -11.79797 -11.55479 -11.38165 -11.12407 -10.29094 -9.35860 -8.94857 -8.65967 -6.31685 0.37030 0.57174 1.24039 1.33778 1.38564 1.47424 1.87805 2.12301 2.66456 2.91119 3.37549 4.07262 4.15375 4.42796 4.47750 4.55736 4.75024 4.75537 4.90725 5.00462 5.03577 5.30381 5.40882 5.51146 5.67676 5.85215 6.09490 6.17683 6.45100 6.77812 6.88308 7.01906 8.08351 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019323 B = 0.009923 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.668131 B = 2821.060163 C = 3941.833195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.133 4.133 6 C -0.060 4.060 7 Cl -0.088 7.088 8 C -0.124 4.124 9 C 0.024 3.976 10 C -0.421 4.421 11 C 0.057 3.943 12 C -0.441 4.441 13 H 0.085 0.915 14 C 0.036 3.964 15 N -0.815 5.815 16 Si 0.976 3.024 17 H -0.255 1.255 18 H -0.255 1.255 19 H -0.258 1.258 20 H 0.113 0.887 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.157 0.843 24 H 0.149 0.851 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 5.954 0.201 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.018 3.982 4 C -0.198 4.198 5 C -0.152 4.152 6 C -0.086 4.086 7 Cl -0.059 7.059 8 C -0.143 4.143 9 C 0.023 3.977 10 C -0.442 4.442 11 C 0.036 3.964 12 C -0.468 4.468 13 H 0.103 0.897 14 C -0.183 4.183 15 N -0.438 5.438 16 Si 0.795 3.205 17 H -0.179 1.179 18 H -0.179 1.179 19 H -0.181 1.181 20 H 0.131 0.869 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.174 0.826 24 H 0.167 0.833 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.300 5.780 0.153 10.116 hybrid contribution 0.416 0.208 -0.273 0.539 sum -7.883 5.988 -0.120 9.901 Atomic orbital electron populations 1.23285 0.77345 1.05000 1.01962 1.86028 1.22616 1.27168 1.89039 1.19573 0.91902 0.84836 1.01929 1.21152 1.00536 0.90721 1.07410 1.20771 0.91435 0.98309 1.04653 1.20754 0.93381 0.85269 1.09216 1.98287 1.82155 1.28117 1.97367 1.21124 0.99865 0.90030 1.03287 1.17329 0.89767 0.93532 0.97109 1.19855 1.05656 0.98782 1.19897 1.20511 0.91312 0.94804 0.89775 1.20038 0.97781 1.09604 1.19375 0.89742 1.27196 0.95581 0.98873 0.96684 1.69537 1.06193 1.32039 1.36047 0.85267 0.79534 0.77762 0.77934 1.17896 1.17920 1.18123 0.86917 0.91724 0.92003 0.82555 0.83334 0.86179 0.91159 0.91403 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 15 2 O -0.33 -13.19 9.94 -90.25 -0.90 -14.09 15 3 C 0.06 2.64 6.71 22.98 0.15 2.79 15 4 C -0.18 -6.11 9.03 22.32 0.20 -5.91 15 5 C -0.13 -4.51 9.82 22.41 0.22 -4.29 15 6 C -0.06 -2.34 6.31 22.28 0.14 -2.20 15 7 Cl -0.09 -3.03 28.94 -2.72 -0.08 -3.11 15 8 C -0.12 -5.72 7.22 22.67 0.16 -5.56 15 9 C 0.02 1.16 5.14 -21.20 -0.11 1.05 15 10 C -0.42 -22.53 9.27 23.18 0.21 -22.32 15 11 C 0.06 3.17 9.33 22.41 0.21 3.38 15 12 C -0.44 -23.44 6.93 22.97 0.16 -23.28 15 13 H 0.08 4.51 5.55 -2.91 -0.02 4.49 15 14 C 0.04 1.77 5.51 85.45 0.47 2.24 15 15 N -0.81 -40.73 12.88 21.95 0.28 -40.45 15 16 Si 0.98 37.26 29.57 68.60 2.03 39.29 15 17 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 18 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 20 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.06 1.38 7.66 -2.39 -0.02 1.36 15 22 H 0.06 1.37 7.66 -2.39 -0.02 1.35 15 23 H 0.16 4.00 6.29 -2.91 -0.02 3.98 15 24 H 0.15 4.01 8.06 -2.91 -0.02 3.99 15 25 H 0.12 5.95 6.53 -2.91 -0.02 5.93 15 26 H 0.07 3.80 8.05 -2.91 -0.02 3.78 15 27 H 0.07 3.87 7.46 -2.91 -0.02 3.85 15 28 H 0.30 13.32 8.29 -92.71 -0.77 12.55 15 Total: -1.00 -58.95 261.41 5.45 -53.50 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.17 Total: 17.37 kcal Atomic # 6 Polarization: -55.46 SS G_CDS: 2.94 Total: -52.52 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.28 Total: -40.45 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.90 Total: -14.09 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.08 Total: -3.11 kcal Total: -58.95 5.45 -53.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379488908.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.132 kcal (2) G-P(sol) polarization free energy of solvation -58.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds