Wall clock time and date at job start Mon Mar 30 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48499 * 109.47385 * 89.99655 * 3 2 1 5 5 H 1.48503 * 109.47193 * 209.99898 * 3 2 1 6 6 H 1.48506 * 109.47066 * 329.99818 * 3 2 1 7 7 C 1.39978 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00141 * 154.82815 * 7 2 1 9 9 C 1.41002 * 119.99961 * 334.83323 * 7 2 1 10 10 C 1.41233 * 120.33824 * 326.73146 * 9 7 2 11 11 N 1.37350 * 134.04161 * 0.73047 * 10 9 7 12 12 H 0.97003 * 126.29988 * 359.23060 * 11 10 9 13 13 C 1.36019 * 107.39400 * 179.51044 * 11 10 9 14 14 N 1.30139 * 109.96750 * 359.73958 * 13 11 10 15 15 C 1.35828 * 109.49245 * 0.02562 * 14 13 11 16 16 C 1.40042 * 133.42542 * 180.02562 * 15 14 13 17 17 C 1.38187 * 120.31564 * 179.97438 * 16 15 14 18 18 C 1.37933 * 120.82952 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.92624 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.46937 * 21.47268 * 19 18 17 21 21 F 1.39898 * 109.47259 * 141.47657 * 19 18 17 22 22 H 0.97003 * 120.00138 * 173.93074 * 1 2 3 23 23 H 1.07997 * 125.01520 * 179.72673 * 13 11 10 24 24 H 1.08003 * 119.84017 * 359.97438 * 16 15 14 25 25 H 1.08002 * 119.58255 * 179.97438 * 17 16 15 26 26 H 1.09003 * 109.46726 * 261.47314 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4898 2.0465 1.4000 5 1 3.5400 1.4401 -0.7000 6 1 1.4398 2.6527 -0.7001 7 6 2.0083 -1.2122 0.0005 8 1 3.0113 -1.2568 -0.3972 9 6 1.4037 -2.3752 0.5203 10 6 0.5033 -2.2872 1.6049 11 7 0.0072 -1.2470 2.3521 12 1 0.2279 -0.3083 2.2474 13 6 -0.8458 -1.7762 3.2699 14 7 -0.9060 -3.0684 3.1275 15 6 -0.0937 -3.4503 2.1081 16 6 0.2164 -4.6910 1.5374 17 6 1.1027 -4.7705 0.4802 18 6 1.6960 -3.6354 -0.0317 19 6 2.6592 -3.7456 -1.1855 20 9 2.4334 -4.9456 -1.8684 21 9 2.4668 -2.6691 -2.0580 22 1 -0.4850 -0.8353 -0.0888 23 1 -1.3923 -1.2080 4.0081 24 1 -0.2393 -5.5900 1.9255 25 1 1.3337 -5.7336 0.0493 26 1 3.6816 -3.7291 -0.8080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396067842.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:04 Heat of formation + Delta-G solvation = -63.816245 kcal Electronic energy + Delta-G solvation = -16871.354828 eV Core-core repulsion = 13777.924063 eV Total energy + Delta-G solvation = -3093.430764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.67517 -47.69036 -42.71576 -38.10489 -36.17064 -33.14605 -31.40093 -30.66635 -27.48273 -25.95893 -23.54706 -22.42376 -21.91502 -20.07804 -18.61411 -18.20056 -17.96485 -17.53599 -16.84660 -15.94796 -15.80131 -15.47690 -15.11619 -14.64160 -14.45197 -14.08743 -13.83908 -13.77020 -13.38285 -12.94580 -12.60547 -12.18829 -12.06792 -11.85583 -11.60993 -11.29446 -10.93359 -10.69913 -9.48736 -9.15360 -8.90250 -6.54150 0.32871 0.91276 1.48624 1.51795 1.77132 2.03589 2.24047 2.39656 2.64500 3.14663 3.30941 3.59614 3.78259 4.04774 4.24090 4.35289 4.55340 4.82557 4.87341 5.03078 5.10300 5.37276 5.69469 5.80103 5.87376 5.94644 6.19012 6.47788 6.63743 6.77612 7.16109 7.83867 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.015525 C = 0.008713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.526205 B = 1803.142234 C = 3212.878513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.003 3.997 3 Si 1.114 2.886 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.087 0.913 9 C 0.121 3.879 10 C -0.035 4.035 11 N -0.569 5.569 12 H 0.424 0.576 13 C 0.240 3.760 14 N -0.546 5.546 15 C 0.057 3.943 16 C -0.220 4.220 17 C -0.042 4.042 18 C -0.328 4.328 19 C 0.340 3.660 20 F -0.217 7.217 21 F -0.213 7.213 22 H 0.277 0.723 23 H 0.254 0.746 24 H 0.116 0.884 25 H 0.129 0.871 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 1.862 2.300 4.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.213 4.213 3 Si 0.930 3.070 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.105 0.895 9 C 0.116 3.884 10 C -0.145 4.145 11 N -0.179 5.179 12 H 0.265 0.735 13 C -0.046 4.046 14 N -0.269 5.269 15 C -0.063 4.063 16 C -0.241 4.241 17 C -0.063 4.063 18 C -0.333 4.333 19 C 0.287 3.713 20 F -0.198 7.198 21 F -0.194 7.194 22 H 0.089 0.911 23 H 0.270 0.730 24 H 0.134 0.866 25 H 0.147 0.853 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.939 2.918 2.789 4.993 hybrid contribution 0.365 -0.989 -0.841 1.348 sum 3.304 1.929 1.948 4.294 Atomic orbital electron populations 1.70598 1.08502 1.32672 1.30973 1.28454 0.95556 1.07256 0.90009 0.83015 0.74853 0.69563 0.79532 1.17616 1.18862 1.19979 1.20768 1.03385 0.94191 1.36620 0.89491 1.16631 0.89326 0.93572 0.88860 1.19264 1.06748 0.88498 1.00016 1.43207 1.36911 1.09755 1.28070 0.73453 1.26062 0.93299 0.90381 0.94884 1.70367 1.24560 1.12012 1.19991 1.19297 0.97143 0.94333 0.95504 1.19713 1.07316 0.94205 1.02872 1.20331 0.94335 0.97197 0.94390 1.19889 1.14012 0.94479 1.04890 1.19977 0.99979 0.69601 0.81766 1.92869 1.96708 1.47913 1.82355 1.92937 1.97016 1.57096 1.72351 0.91134 0.72987 0.86620 0.85286 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.74 11.50 21.83 0.25 -38.49 15 2 C 0.00 0.13 4.20 85.26 0.36 0.49 15 3 Si 1.11 37.99 30.00 68.60 2.06 40.05 15 4 H -0.25 -7.71 7.11 99.48 0.71 -7.00 15 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 6 H -0.27 -9.40 7.11 99.48 0.71 -8.70 15 7 C -0.52 -25.16 7.05 23.37 0.16 -25.00 15 8 H 0.09 4.12 6.93 -2.91 -0.02 4.10 15 9 C 0.12 6.03 5.08 -21.27 -0.11 5.92 15 10 C -0.03 -1.68 5.61 39.46 0.22 -1.46 15 11 N -0.57 -23.70 5.16 -190.09 -0.98 -24.68 15 12 H 0.42 16.70 6.95 -92.71 -0.64 16.05 15 13 C 0.24 8.82 12.98 180.05 2.34 11.16 15 14 N -0.55 -24.26 11.29 -192.09 -2.17 -26.42 15 15 C 0.06 2.80 7.22 39.41 0.28 3.08 15 16 C -0.22 -10.12 10.10 22.70 0.23 -9.89 15 17 C -0.04 -1.87 9.36 22.19 0.21 -1.66 15 18 C -0.33 -15.28 5.79 -19.35 -0.11 -15.39 15 19 C 0.34 13.89 5.17 71.24 0.37 14.26 15 20 F -0.22 -8.52 16.23 44.97 0.73 -7.79 15 21 F -0.21 -9.68 14.78 44.97 0.66 -9.01 15 22 H 0.28 14.76 6.96 -92.71 -0.64 14.11 15 23 H 0.25 5.99 8.06 -2.91 -0.02 5.97 15 24 H 0.12 4.86 8.06 -2.91 -0.02 4.84 15 25 H 0.13 4.95 7.36 -2.91 -0.02 4.92 15 26 H 0.13 4.26 8.14 -2.39 -0.02 4.24 15 Total: -1.00 -59.51 235.29 5.23 -54.28 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.72 Total: 30.57 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.95 Total: -18.50 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.90 Total: -89.59 kcal Atomic # 9 Polarization: -18.19 SS G_CDS: 1.39 Total: -16.80 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.06 Total: 40.05 kcal Total: -59.51 5.23 -54.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396067842.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.536 kcal (2) G-P(sol) polarization free energy of solvation -59.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds