Wall clock time and date at job start Mon Mar 30 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86799 * 120.00372 * 2 1 4 4 H 1.48496 * 109.46786 * 239.99900 * 3 2 1 5 5 H 1.48505 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47306 * 119.99585 * 3 2 1 7 7 C 1.39921 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 189.92743 * 7 2 1 9 9 C 1.41100 * 119.99870 * 9.94176 * 7 2 1 10 10 C 1.41207 * 120.04382 * 30.52195 * 9 7 2 11 11 C 1.35786 * 120.43022 * 180.23947 * 10 9 7 12 12 C 1.40459 * 120.21256 * 359.49992 * 11 10 9 13 13 N 1.34813 * 133.22512 * 180.22808 * 12 11 10 14 14 C 1.30342 * 109.89096 * 180.02562 * 13 12 11 15 15 N 1.35921 * 110.13523 * 0.02562 * 14 13 12 16 16 H 0.97005 * 126.45086 * 180.02562 * 15 14 13 17 17 C 1.38316 * 107.09977 * 359.97438 * 15 14 13 18 18 C 1.38008 * 133.95094 * 179.97438 * 17 15 14 19 19 C 1.50699 * 120.25198 * 0.04598 * 18 17 15 20 20 F 1.39898 * 109.47280 * 218.58087 * 19 18 17 21 21 F 1.39899 * 109.47551 * 338.58061 * 19 18 17 22 22 H 0.97004 * 119.99360 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.78494 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.88945 * 179.77361 * 11 10 9 25 25 H 1.08006 * 124.93419 * 180.02562 * 14 13 12 26 26 H 1.09006 * 109.46978 * 98.58450 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6962 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6964 1.2126 7 6 2.0082 -1.2118 0.0005 8 1 3.0761 -1.2188 0.1618 9 6 1.3185 -2.4246 -0.2099 10 6 0.1607 -2.4485 -1.0179 11 6 -0.5118 -3.6104 -1.2218 12 6 -0.0549 -4.8034 -0.6379 13 7 -0.5015 -6.0751 -0.6656 14 6 0.2801 -6.8352 0.0486 15 7 1.2867 -6.0971 0.5865 16 1 2.0002 -6.4242 1.1565 17 6 1.1029 -4.7919 0.1671 18 6 1.7859 -3.6119 0.3811 19 6 3.0235 -3.5962 1.2408 20 9 3.0405 -2.4295 2.0125 21 9 3.0202 -4.7128 2.0836 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1946 -1.5360 -1.4733 24 1 -1.3984 -3.6180 -1.8384 25 1 0.1471 -7.8974 0.1923 26 1 3.9082 -3.6238 0.6045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396069281.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:07 Heat of formation + Delta-G solvation = -43.428403 kcal Electronic energy + Delta-G solvation = -16724.231211 eV Core-core repulsion = 13631.684530 eV Total energy + Delta-G solvation = -3092.546681 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.06287 -46.05080 -40.78793 -36.50242 -33.35885 -32.25857 -29.75689 -28.74177 -25.81975 -24.28561 -21.35190 -21.13437 -20.04733 -17.91014 -16.83182 -16.55232 -16.16958 -15.58409 -15.39291 -14.50184 -14.05369 -13.96289 -13.13605 -12.93792 -12.71750 -12.51761 -12.02188 -11.89070 -11.49910 -11.27879 -10.93798 -10.90759 -10.27688 -10.18826 -9.83833 -9.63633 -9.26156 -8.88491 -7.27421 -7.16704 -6.91236 -4.58404 2.17566 2.86624 2.98166 3.00856 3.04165 3.75128 3.80214 3.98197 4.56282 4.74674 5.27465 5.30576 5.46388 5.73819 5.93164 5.99750 6.39406 6.62696 6.66235 6.83869 7.02050 7.33123 7.45566 7.63119 7.76388 7.95998 8.27825 8.40718 8.55202 8.58859 8.99919 9.95472 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030116 B = 0.010107 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.509926 B = 2769.710001 C = 3591.939738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.087 0.913 9 C 0.161 3.839 10 C -0.128 4.128 11 C -0.056 4.056 12 C -0.053 4.053 13 N -0.484 5.484 14 C 0.172 3.828 15 N -0.609 5.609 16 H 0.413 0.587 17 C 0.129 3.871 18 C -0.329 4.329 19 C 0.339 3.661 20 F -0.196 7.196 21 F -0.229 7.229 22 H 0.287 0.713 23 H 0.132 0.868 24 H 0.103 0.897 25 H 0.194 0.806 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -3.213 0.334 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.105 0.895 9 C 0.157 3.843 10 C -0.149 4.149 11 C -0.076 4.076 12 C -0.171 4.171 13 N -0.203 5.203 14 C -0.111 4.111 15 N -0.224 5.224 16 H 0.251 0.749 17 C 0.018 3.982 18 C -0.336 4.336 19 C 0.286 3.714 20 F -0.177 7.177 21 F -0.211 7.211 22 H 0.098 0.902 23 H 0.150 0.850 24 H 0.121 0.879 25 H 0.211 0.789 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.221 -3.280 -0.116 4.599 hybrid contribution 1.307 0.683 1.007 1.786 sum 4.529 -2.597 0.892 5.296 Atomic orbital electron populations 1.69782 1.07638 1.30108 1.33239 1.25999 0.94922 1.01750 0.91901 0.86179 0.80043 0.79321 0.80273 1.18558 1.20075 1.18577 1.19670 0.96274 0.90027 1.40068 0.89509 1.17064 0.90365 0.90280 0.86619 1.21066 0.97197 0.96564 1.00038 1.19782 0.98767 0.90092 0.98976 1.18531 0.97826 0.92073 1.08709 1.69723 1.27852 1.02321 1.20406 1.24551 0.88918 0.98101 0.99564 1.43113 1.26753 1.07327 1.45172 0.74900 1.18303 0.97625 0.84124 0.98158 1.18717 1.05793 0.93235 1.15855 1.19874 0.99042 0.69924 0.82596 1.92971 1.97797 1.49309 1.77644 1.92780 1.97988 1.54949 1.75355 0.90179 0.85029 0.87901 0.78944 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.90 10.89 55.55 0.61 -18.29 15 2 C 0.07 1.73 5.25 -17.34 -0.09 1.64 15 3 Si 0.92 17.54 29.57 -169.99 -5.03 12.51 15 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 7 C -0.43 -10.56 7.26 -37.87 -0.28 -10.84 15 8 H 0.09 2.03 6.67 -52.49 -0.35 1.68 15 9 C 0.16 4.05 5.51 -106.78 -0.59 3.46 15 10 C -0.13 -3.16 8.55 -39.33 -0.34 -3.49 15 11 C -0.06 -1.34 10.02 -39.62 -0.40 -1.73 15 12 C -0.05 -1.29 7.23 -84.67 -0.61 -1.90 15 13 N -0.48 -10.84 11.23 -11.93 -0.13 -10.97 15 14 C 0.17 3.17 12.97 -89.70 -1.16 2.01 15 15 N -0.61 -11.66 5.93 -11.75 -0.07 -11.73 15 16 H 0.41 6.69 7.40 -40.82 -0.30 6.38 15 17 C 0.13 2.99 6.72 -83.97 -0.56 2.42 15 18 C -0.33 -7.82 5.79 -103.81 -0.60 -8.42 15 19 C 0.34 7.08 5.16 36.00 0.19 7.27 15 20 F -0.20 -4.46 14.75 2.25 0.03 -4.43 15 21 F -0.23 -4.49 14.97 2.25 0.03 -4.46 15 22 H 0.29 6.29 8.30 -40.82 -0.34 5.95 15 23 H 0.13 3.23 6.29 -52.49 -0.33 2.90 15 24 H 0.10 2.23 8.06 -52.49 -0.42 1.81 15 25 H 0.19 2.50 8.06 -52.48 -0.42 2.08 15 26 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 LS Contribution 236.03 15.07 3.56 3.56 Total: -1.00 -28.44 236.03 -6.83 -35.27 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -1.38 Total: 8.12 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -4.44 Total: -9.58 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.40 Total: -41.00 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.44 -6.83 -35.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396069281.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.161 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds