Wall clock time and date at job start Mon Mar 30 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86799 * 120.00372 * 2 1 4 4 H 1.48496 * 109.46786 * 239.99900 * 3 2 1 5 5 H 1.48505 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47306 * 119.99585 * 3 2 1 7 7 C 1.39921 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 189.92743 * 7 2 1 9 9 C 1.41100 * 119.99870 * 9.94176 * 7 2 1 10 10 C 1.41207 * 120.04382 * 30.52195 * 9 7 2 11 11 C 1.35786 * 120.43022 * 180.23947 * 10 9 7 12 12 C 1.40459 * 120.21256 * 359.49992 * 11 10 9 13 13 N 1.34813 * 133.22512 * 180.22808 * 12 11 10 14 14 C 1.30342 * 109.89096 * 180.02562 * 13 12 11 15 15 N 1.35921 * 110.13523 * 0.02562 * 14 13 12 16 16 H 0.97005 * 126.45086 * 180.02562 * 15 14 13 17 17 C 1.38316 * 107.09977 * 359.97438 * 15 14 13 18 18 C 1.38008 * 133.95094 * 179.97438 * 17 15 14 19 19 C 1.50699 * 120.25198 * 0.04598 * 18 17 15 20 20 F 1.39898 * 109.47280 * 218.58087 * 19 18 17 21 21 F 1.39899 * 109.47551 * 338.58061 * 19 18 17 22 22 H 0.97004 * 119.99360 * 0.02562 * 1 2 3 23 23 H 1.07997 * 119.78494 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.88945 * 179.77361 * 11 10 9 25 25 H 1.08006 * 124.93419 * 180.02562 * 14 13 12 26 26 H 1.09006 * 109.46978 * 98.58450 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6962 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6964 1.2126 7 6 2.0082 -1.2118 0.0005 8 1 3.0761 -1.2188 0.1618 9 6 1.3185 -2.4246 -0.2099 10 6 0.1607 -2.4485 -1.0179 11 6 -0.5118 -3.6104 -1.2218 12 6 -0.0549 -4.8034 -0.6379 13 7 -0.5015 -6.0751 -0.6656 14 6 0.2801 -6.8352 0.0486 15 7 1.2867 -6.0971 0.5865 16 1 2.0002 -6.4242 1.1565 17 6 1.1029 -4.7919 0.1671 18 6 1.7859 -3.6119 0.3811 19 6 3.0235 -3.5962 1.2408 20 9 3.0405 -2.4295 2.0125 21 9 3.0202 -4.7128 2.0836 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1946 -1.5360 -1.4733 24 1 -1.3984 -3.6180 -1.8384 25 1 0.1471 -7.8974 0.1923 26 1 3.9082 -3.6238 0.6045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396069281.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:07 Heat of formation + Delta-G solvation = -59.355717 kcal Electronic energy + Delta-G solvation = -16724.921871 eV Core-core repulsion = 13631.684530 eV Total energy + Delta-G solvation = -3093.237341 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.71248 -47.72536 -42.45792 -38.26145 -35.10902 -33.95676 -31.49375 -30.49745 -27.53526 -26.01753 -23.00234 -22.89788 -21.73318 -19.66131 -18.47406 -18.18633 -17.85638 -17.30098 -17.08742 -16.16460 -15.71731 -15.60711 -14.85541 -14.56903 -14.34459 -14.18655 -13.71181 -13.59840 -13.23605 -12.84034 -12.66263 -12.56261 -11.96248 -11.86785 -11.56229 -11.32892 -10.97842 -10.58559 -9.03792 -8.94217 -8.64698 -6.39761 0.43801 1.08719 1.42720 1.50174 1.54193 2.13088 2.20888 2.43810 2.80650 3.13279 3.51745 3.69358 3.86909 4.08419 4.34164 4.34483 4.69771 4.86305 4.94912 5.08746 5.27750 5.56489 5.66780 5.84811 5.96039 6.16037 6.46848 6.76897 6.79348 6.90235 7.34028 8.25840 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030116 B = 0.010107 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.509926 B = 2769.710001 C = 3591.939738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.091 0.909 9 C 0.133 3.867 10 C -0.144 4.144 11 C -0.066 4.066 12 C -0.078 4.078 13 N -0.523 5.523 14 C 0.210 3.790 15 N -0.599 5.599 16 H 0.428 0.572 17 C 0.108 3.892 18 C -0.339 4.339 19 C 0.340 3.660 20 F -0.209 7.209 21 F -0.221 7.221 22 H 0.293 0.707 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.254 0.746 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -4.360 0.843 6.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.485 4.485 8 H 0.109 0.891 9 C 0.128 3.872 10 C -0.165 4.165 11 C -0.086 4.086 12 C -0.195 4.195 13 N -0.243 5.243 14 C -0.075 4.075 15 N -0.214 5.214 16 H 0.270 0.730 17 C -0.003 4.003 18 C -0.346 4.346 19 C 0.286 3.714 20 F -0.190 7.190 21 F -0.203 7.203 22 H 0.104 0.896 23 H 0.140 0.860 24 H 0.130 0.870 25 H 0.270 0.730 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.258 -4.436 0.400 6.162 hybrid contribution 0.934 0.780 0.876 1.500 sum 5.192 -3.655 1.277 6.477 Atomic orbital electron populations 1.69839 1.09010 1.31248 1.34143 1.26827 0.95581 1.04710 0.90987 0.85175 0.78745 0.75215 0.80265 1.17674 1.19273 1.18676 1.19869 0.96557 0.90632 1.41457 0.89134 1.17386 0.91000 0.91391 0.87410 1.21032 0.97994 0.96533 1.00893 1.19950 0.99119 0.90296 0.99265 1.18808 0.98587 0.92920 1.09193 1.69753 1.29702 1.01859 1.22984 1.25782 0.86284 0.99870 0.95529 1.43141 1.27387 1.05882 1.45014 0.73033 1.18410 0.97590 0.85604 0.98720 1.19056 1.06695 0.93155 1.15683 1.20036 0.99129 0.69676 0.82515 1.92942 1.97822 1.50237 1.77991 1.92783 1.97961 1.54372 1.75140 0.89587 0.85964 0.86957 0.73045 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.41 10.89 21.82 0.24 -40.17 15 2 C 0.04 1.67 5.25 85.25 0.45 2.12 15 3 Si 0.99 35.86 29.57 68.60 2.03 37.89 15 4 H -0.25 -8.77 7.11 99.48 0.71 -8.06 15 5 H -0.27 -9.31 7.11 99.48 0.71 -8.60 15 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 7 C -0.46 -22.67 7.26 23.38 0.17 -22.50 15 8 H 0.09 4.26 6.67 -2.91 -0.02 4.24 15 9 C 0.13 6.80 5.51 -21.27 -0.12 6.68 15 10 C -0.14 -7.36 8.55 22.43 0.19 -7.17 15 11 C -0.07 -3.25 10.02 22.24 0.22 -3.03 15 12 C -0.08 -3.76 7.23 39.91 0.29 -3.48 15 13 N -0.52 -22.46 11.23 -191.66 -2.15 -24.61 15 14 C 0.21 6.93 12.97 180.03 2.33 9.26 15 15 N -0.60 -21.11 5.93 -191.07 -1.13 -22.24 15 16 H 0.43 12.31 7.40 -92.70 -0.69 11.63 15 17 C 0.11 4.92 6.72 38.75 0.26 5.18 15 18 C -0.34 -16.03 5.79 -19.34 -0.11 -16.14 15 19 C 0.34 13.72 5.16 71.24 0.37 14.08 15 20 F -0.21 -9.35 14.75 44.97 0.66 -8.69 15 21 F -0.22 -8.16 14.97 44.97 0.67 -7.48 15 22 H 0.29 13.11 8.30 -92.71 -0.77 12.34 15 23 H 0.12 6.31 6.29 -2.91 -0.02 6.29 15 24 H 0.11 5.05 8.06 -2.91 -0.02 5.02 15 25 H 0.25 4.97 8.06 -2.91 -0.02 4.95 15 26 H 0.12 4.15 8.14 -2.38 -0.02 4.13 15 Total: -1.00 -62.10 236.03 4.93 -57.16 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.56 Total: 23.14 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 4.05 Total: -14.99 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -3.05 Total: -87.03 kcal Atomic # 9 Polarization: -17.51 SS G_CDS: 1.34 Total: -16.18 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -62.10 4.93 -57.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396069281.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.195 kcal (2) G-P(sol) polarization free energy of solvation -62.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds