Wall clock time and date at job start Mon Mar 30 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48504 * 109.46818 * 269.99628 * 3 2 1 5 5 H 1.48492 * 109.47220 * 30.00203 * 3 2 1 6 6 H 1.48504 * 109.46758 * 150.00173 * 3 2 1 7 7 C 1.39884 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99546 * 163.17256 * 7 2 1 9 9 C 1.41324 * 120.00008 * 343.17362 * 7 2 1 10 10 C 1.40353 * 120.00984 * 334.35654 * 9 7 2 11 11 C 1.39115 * 119.41819 * 180.02562 * 10 9 7 12 12 N 1.35934 * 133.45705 * 180.02562 * 11 10 9 13 13 C 1.30054 * 109.54916 * 180.02562 * 12 11 10 14 14 N 1.36126 * 110.17680 * 359.97438 * 13 12 11 15 15 H 0.96997 * 126.28503 * 180.02562 * 14 13 12 16 16 C 1.37756 * 107.42539 * 359.97438 * 14 13 12 17 17 C 1.39367 * 133.74280 * 179.97438 * 16 14 13 18 18 C 1.50704 * 119.85916 * 0.03200 * 17 16 14 19 19 F 1.39896 * 109.47640 * 209.97834 * 18 17 16 20 20 F 1.39904 * 109.46663 * 329.97629 * 18 17 16 21 21 C 1.36140 * 120.28971 * 180.02562 * 17 16 14 22 22 H 0.96998 * 120.00209 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.29615 * 0.06221 * 10 9 7 24 24 H 1.07998 * 124.91165 * 180.02562 * 13 12 11 25 25 H 1.09002 * 109.46965 * 89.97006 * 18 17 16 26 26 H 1.07997 * 119.81855 * 179.72427 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2115 0.0005 8 1 3.0535 -1.2316 -0.2702 9 6 1.3469 -2.4090 0.3554 10 6 0.2218 -2.3678 1.1934 11 6 -0.4194 -3.5541 1.5352 12 7 -1.5023 -3.8436 2.3043 13 6 -1.7017 -5.1288 2.3088 14 7 -0.7635 -5.7522 1.5445 15 1 -0.6939 -6.7066 1.3862 16 6 0.0681 -4.7786 1.0364 17 6 1.1866 -4.8043 0.2053 18 6 1.7001 -6.1196 -0.3212 19 9 3.0834 -6.0372 -0.5130 20 9 1.4167 -7.1333 0.6005 21 6 1.8173 -3.6462 -0.1331 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1435 -1.4234 1.5691 24 1 -2.4971 -5.6289 2.8412 25 1 1.2144 -6.3455 -1.2705 26 1 2.6860 -3.6753 -0.7740 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396070093.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:18 Heat of formation + Delta-G solvation = -43.533359 kcal Electronic energy + Delta-G solvation = -16373.270299 eV Core-core repulsion = 13280.719066 eV Total energy + Delta-G solvation = -3092.551232 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.60778 -46.63560 -40.88115 -36.47553 -33.59573 -32.14221 -29.79969 -28.68127 -25.55502 -24.88320 -21.75089 -20.93439 -20.11273 -17.50745 -17.43055 -17.04873 -16.53005 -15.73676 -15.23874 -14.93503 -14.12357 -13.87382 -13.52426 -13.04127 -13.00799 -12.68738 -12.49077 -11.91676 -11.51213 -11.23558 -10.98655 -10.80551 -10.36801 -10.15632 -9.99697 -9.67156 -9.15204 -8.95600 -7.34365 -7.09456 -6.73993 -4.34714 2.05408 2.68739 3.09430 3.10741 3.16714 3.73666 3.83516 3.95456 4.22531 4.58007 4.78808 5.11679 5.20500 5.28148 5.60257 5.77868 6.31821 6.61433 6.62698 6.79509 7.14906 7.23557 7.33613 7.71430 7.89005 7.97461 8.26728 8.42117 8.80271 8.82020 8.92910 10.21658 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.008686 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.973851 B = 3222.741999 C = 4147.226613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.091 3.909 10 C -0.118 4.118 11 C 0.071 3.929 12 N -0.508 5.508 13 C 0.229 3.771 14 N -0.608 5.608 15 H 0.410 0.590 16 C -0.016 4.016 17 C -0.159 4.159 18 C 0.315 3.685 19 F -0.203 7.203 20 F -0.215 7.215 21 C -0.124 4.124 22 H 0.282 0.718 23 H 0.130 0.870 24 H 0.199 0.801 25 H 0.108 0.892 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -7.997 -0.417 8.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.087 3.913 10 C -0.140 4.140 11 C -0.044 4.044 12 N -0.230 5.230 13 C -0.058 4.058 14 N -0.223 5.223 15 H 0.247 0.753 16 C -0.123 4.123 17 C -0.163 4.163 18 C 0.262 3.738 19 F -0.185 7.185 20 F -0.196 7.196 21 C -0.144 4.144 22 H 0.093 0.907 23 H 0.148 0.852 24 H 0.215 0.785 25 H 0.125 0.875 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.774 -7.155 0.002 7.197 hybrid contribution 0.774 -0.491 -0.465 1.028 sum 0.000 -7.646 -0.463 7.660 Atomic orbital electron populations 1.69823 1.07485 1.29338 1.35208 1.25861 0.94734 1.01265 0.92440 0.86309 0.80602 0.80686 0.79120 1.19579 1.20112 1.18467 1.19391 0.97699 0.90754 1.41328 0.90153 1.17264 0.92047 0.91635 0.90340 1.20586 0.98440 0.94731 1.00292 1.19018 0.93989 0.93106 0.98334 1.70401 1.17799 1.12395 1.22384 1.24931 0.94797 0.89517 0.96555 1.42844 1.26620 1.08794 1.44010 0.75282 1.18115 0.97889 0.89689 1.06605 1.18532 0.98520 0.93517 1.05750 1.20408 0.77140 0.85096 0.91178 1.92950 1.33103 1.96627 1.95779 1.92875 1.93264 1.63100 1.70398 1.20651 1.00568 0.91483 1.01660 0.90745 0.85182 0.78474 0.87472 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 10.96 55.54 0.61 -19.94 15 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 15 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 15 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 15 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 7 C -0.46 -11.87 9.04 -37.79 -0.34 -12.21 15 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 15 9 C 0.09 2.37 5.56 -106.85 -0.59 1.78 15 10 C -0.12 -3.16 8.73 -38.46 -0.34 -3.49 15 11 C 0.07 1.76 7.21 -84.71 -0.61 1.15 15 12 N -0.51 -11.57 11.28 -12.05 -0.14 -11.71 15 13 C 0.23 4.02 12.96 -89.75 -1.16 2.86 15 14 N -0.61 -10.74 5.93 -11.59 -0.07 -10.81 15 15 H 0.41 5.82 7.69 -40.82 -0.31 5.50 15 16 C -0.02 -0.36 6.73 -83.77 -0.56 -0.92 15 17 C -0.16 -3.38 5.71 -104.95 -0.60 -3.98 15 18 C 0.32 5.38 5.65 36.01 0.20 5.58 15 19 F -0.20 -3.63 16.43 2.25 0.04 -3.59 15 20 F -0.21 -3.57 15.35 2.25 0.03 -3.53 15 21 C -0.12 -2.86 9.06 -39.26 -0.36 -3.22 15 22 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 23 H 0.13 3.67 6.19 -52.48 -0.32 3.35 15 24 H 0.20 2.33 8.06 -52.49 -0.42 1.91 15 25 H 0.11 1.48 8.14 -51.93 -0.42 1.06 15 26 H 0.11 2.44 7.54 -52.49 -0.40 2.05 15 LS Contribution 240.47 15.07 3.62 3.62 Total: -1.00 -29.65 240.47 -6.81 -36.46 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -1.43 Total: 6.74 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -4.45 Total: -10.69 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.40 Total: -42.45 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.07 Total: -7.13 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.65 -6.81 -36.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396070093.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.074 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds