Wall clock time and date at job start Mon Mar 30 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86797 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47531 * 270.00403 * 3 2 1 5 5 H 1.48503 * 109.46815 * 30.00517 * 3 2 1 6 6 H 1.48499 * 109.47237 * 149.99954 * 3 2 1 7 7 C 1.39979 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00175 * 162.54870 * 7 2 1 9 9 C 1.40992 * 119.99946 * 342.55369 * 7 2 1 10 10 C 1.40694 * 120.34330 * 334.98395 * 9 7 2 11 11 C 1.37891 * 120.15677 * 179.97438 * 10 9 7 12 12 C 1.50700 * 119.58915 * 179.97438 * 11 10 9 13 13 F 1.39898 * 109.47220 * 300.00519 * 12 11 10 14 14 F 1.39911 * 109.47064 * 59.99887 * 12 11 10 15 15 C 1.38228 * 120.82904 * 0.02999 * 11 10 9 16 16 C 1.40006 * 120.31415 * 359.94837 * 15 11 10 17 17 N 1.35829 * 133.42925 * 180.02562 * 16 15 11 18 18 C 1.30133 * 109.49134 * 180.02562 * 17 16 15 19 19 N 1.36016 * 109.97821 * 0.02562 * 18 17 16 20 20 H 0.97012 * 126.30443 * 179.97438 * 19 18 17 21 21 C 1.37353 * 107.39764 * 359.97438 * 19 18 17 22 22 H 0.97000 * 119.99770 * 359.97438 * 1 2 3 23 23 H 1.08008 * 119.92088 * 359.70456 * 10 9 7 24 24 H 1.08999 * 109.47804 * 179.97438 * 12 11 10 25 25 H 1.07997 * 119.84675 * 179.97438 * 15 11 10 26 26 H 1.08002 * 125.01182 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6526 0.7002 6 1 3.5400 1.4401 0.7000 7 6 2.0083 -1.2123 -0.0005 8 1 3.0510 -1.2337 -0.2811 9 6 1.3519 -2.4054 0.3650 10 6 0.2234 -2.3673 1.2043 11 6 -0.4159 -3.5364 1.5590 12 6 -1.6232 -3.4808 2.4592 13 9 -1.2675 -2.8998 3.6811 14 9 -2.6230 -2.7136 1.8516 15 6 0.0374 -4.7590 1.1001 16 6 1.1576 -4.8285 0.2632 17 7 1.8178 -5.8568 -0.3299 18 6 2.8163 -5.3902 -1.0218 19 7 2.8614 -4.0349 -0.9169 20 1 3.5095 -3.4475 -1.3365 21 6 1.8203 -3.6508 -0.1074 22 1 -0.4850 0.8401 0.0004 23 1 -0.1405 -1.4204 1.5753 24 1 -1.9951 -4.4909 2.6313 25 1 -0.4752 -5.6649 1.3882 26 1 3.5073 -5.9907 -1.5948 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396070352.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:23 Heat of formation + Delta-G solvation = -64.905872 kcal Electronic energy + Delta-G solvation = -16385.219212 eV Core-core repulsion = 13291.741198 eV Total energy + Delta-G solvation = -3093.478014 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.77941 -47.78841 -42.55947 -38.08279 -35.70915 -33.57618 -31.76723 -30.05236 -27.53230 -26.38694 -23.58475 -22.25627 -21.83334 -19.34695 -18.85834 -18.03243 -18.01814 -17.58151 -16.81585 -16.58957 -15.75395 -15.24630 -14.75724 -14.73177 -14.56255 -14.20396 -14.00667 -13.50171 -13.16786 -12.95318 -12.68668 -12.34013 -12.23700 -12.04980 -11.53629 -11.39974 -10.89272 -10.72128 -9.19061 -8.86795 -8.70928 -6.35844 0.49472 0.89038 1.35099 1.40509 1.51277 2.11611 2.19169 2.46092 2.73295 3.03000 3.41490 3.48381 3.89941 3.98531 4.28920 4.33054 4.69538 4.89133 5.01876 5.06835 5.13786 5.36120 5.67167 5.90195 6.00599 6.17358 6.42381 6.70289 6.76237 6.89038 7.25674 8.23432 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.012589 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.930176 B = 2223.657405 C = 3683.395564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.103 3.897 10 C -0.189 4.189 11 C -0.139 4.139 12 C 0.317 3.683 13 F -0.216 7.216 14 F -0.216 7.216 15 C -0.185 4.185 16 C 0.046 3.954 17 N -0.547 5.547 18 C 0.251 3.749 19 N -0.581 5.581 20 H 0.429 0.571 21 C -0.035 4.035 22 H 0.291 0.709 23 H 0.105 0.895 24 H 0.154 0.846 25 H 0.127 0.873 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -2.995 -0.752 4.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.141 4.141 12 C 0.264 3.736 13 F -0.197 7.197 14 F -0.197 7.197 15 C -0.207 4.207 16 C -0.072 4.072 17 N -0.269 5.269 18 C -0.036 4.036 19 N -0.192 5.192 20 H 0.268 0.732 21 C -0.145 4.145 22 H 0.101 0.899 23 H 0.123 0.877 24 H 0.171 0.829 25 H 0.144 0.856 26 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 3.061 -3.669 -0.641 4.821 hybrid contribution 0.556 2.055 -0.275 2.146 sum 3.618 -1.614 -0.915 4.066 Atomic orbital electron populations 1.69899 1.09216 1.30980 1.33408 1.26819 0.95442 1.04747 0.91330 0.85163 0.79065 0.75678 0.79641 1.18295 1.19519 1.17968 1.19665 0.98208 0.91955 1.41410 0.89648 1.16877 0.92718 0.89782 0.90726 1.20587 1.00786 0.96266 1.03551 1.19934 0.98025 0.94560 1.01609 1.20715 0.83956 0.92359 0.76564 1.92923 1.92824 1.87633 1.46343 1.92945 1.63010 1.79699 1.84086 1.19377 0.99564 0.95801 1.05982 1.18986 0.98188 0.88882 1.01139 1.70333 1.09737 1.31156 1.15705 1.26141 0.97707 0.81047 0.98687 1.42747 1.25987 1.08906 1.41547 0.73161 1.19384 0.95754 0.96539 1.02773 0.89854 0.87740 0.82895 0.85554 0.72193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.99 10.97 21.83 0.24 -41.75 15 2 C 0.03 1.63 5.14 85.26 0.44 2.07 15 3 Si 0.98 36.39 29.59 68.60 2.03 38.42 15 4 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 7 C -0.48 -24.37 9.04 23.37 0.21 -24.16 15 8 H 0.09 3.94 7.90 -2.91 -0.02 3.92 15 9 C 0.10 5.43 5.57 -21.28 -0.12 5.32 15 10 C -0.19 -10.12 8.19 22.79 0.19 -9.93 15 11 C -0.14 -6.54 5.36 -19.95 -0.11 -6.64 15 12 C 0.32 12.50 5.43 71.24 0.39 12.89 15 13 F -0.22 -8.88 17.25 44.97 0.78 -8.11 15 14 F -0.22 -9.29 17.25 44.97 0.78 -8.52 15 15 C -0.19 -8.44 9.71 22.70 0.22 -8.22 15 16 C 0.05 2.16 7.22 39.41 0.28 2.44 15 17 N -0.55 -22.49 11.29 -192.09 -2.17 -24.66 15 18 C 0.25 7.91 12.97 180.06 2.34 10.25 15 19 N -0.58 -20.90 6.20 -190.09 -1.18 -22.08 15 20 H 0.43 12.55 8.96 -92.70 -0.83 11.71 15 21 C -0.03 -1.65 7.03 39.46 0.28 -1.37 15 22 H 0.29 13.72 8.30 -92.71 -0.77 12.95 15 23 H 0.10 5.97 6.19 -2.91 -0.02 5.95 15 24 H 0.15 4.49 7.84 -2.39 -0.02 4.47 15 25 H 0.13 4.95 7.92 -2.91 -0.02 4.93 15 26 H 0.26 4.54 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -66.55 244.71 5.01 -61.54 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.41 Total: 22.51 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.12 Total: -17.36 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -3.11 Total: -88.48 kcal Atomic # 9 Polarization: -18.18 SS G_CDS: 1.55 Total: -16.63 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -66.55 5.01 -61.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396070352.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.364 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds