Wall clock time and date at job start Mon Mar 30 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 119.99449 * 2 1 4 4 H 1.48501 * 109.47129 * 270.60895 * 3 2 1 5 5 H 1.48502 * 109.47550 * 30.60553 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.61046 * 3 2 1 7 7 C 1.39871 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 342.58848 * 7 2 1 9 9 C 1.41323 * 119.99980 * 162.59027 * 7 2 1 10 10 C 1.40357 * 120.01260 * 329.89232 * 9 7 2 11 11 C 1.39107 * 119.41560 * 180.02562 * 10 9 7 12 12 N 1.35944 * 133.44845 * 180.02562 * 11 10 9 13 13 C 1.30063 * 109.54273 * 179.97438 * 12 11 10 14 14 N 1.36118 * 110.17805 * 359.77329 * 13 12 11 15 15 H 0.96998 * 126.28635 * 180.27623 * 14 13 12 16 16 C 1.37758 * 107.42719 * 0.36665 * 14 13 12 17 17 C 1.39375 * 133.74317 * 179.97438 * 16 14 13 18 18 C 1.36135 * 120.28924 * 179.68065 * 17 16 14 19 19 C 1.50692 * 119.81924 * 179.97438 * 18 17 16 20 20 F 1.39896 * 109.47324 * 21.57663 * 19 18 17 21 21 F 1.39903 * 109.46914 * 141.57447 * 19 18 17 22 22 H 0.96997 * 120.00485 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.28589 * 0.04560 * 10 9 7 24 24 H 1.08000 * 124.90815 * 180.02562 * 13 12 11 25 25 H 1.07999 * 119.85525 * 359.65305 * 17 16 14 26 26 H 1.08998 * 109.47765 * 261.57154 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4772 2.0540 -1.4000 5 1 1.4465 2.6491 0.7128 6 1 3.5466 1.4367 0.6870 7 6 2.0082 -1.2112 0.0005 8 1 1.5055 -2.1251 0.2808 9 6 3.3729 -1.2393 -0.3656 10 6 3.8719 -0.3054 -1.2870 11 6 5.2171 -0.3447 -1.6390 12 7 5.9860 0.3987 -2.4782 13 6 7.2082 -0.0456 -2.4568 14 7 7.3099 -1.0992 -1.6010 15 1 8.1149 -1.6033 -1.4043 16 6 6.0592 -1.3193 -1.0672 17 6 5.5499 -2.2399 -0.1530 18 6 4.2342 -2.2062 0.1948 19 6 3.6947 -3.2070 1.1838 20 9 4.7464 -3.7152 1.9538 21 9 2.7644 -2.5810 2.0204 22 1 -0.4851 0.8400 -0.0004 23 1 3.2173 0.4372 -1.7185 24 1 8.0252 0.3649 -3.0317 25 1 6.2019 -2.9836 0.2809 26 1 3.2099 -4.0228 0.6476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396075652.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:30 Heat of formation + Delta-G solvation = -37.245806 kcal Electronic energy + Delta-G solvation = -16609.807784 eV Core-core repulsion = 13517.529200 eV Total energy + Delta-G solvation = -3092.278584 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.15358 -46.12268 -41.10103 -36.77136 -33.43670 -32.32715 -29.89213 -29.68024 -25.54197 -24.62969 -21.91399 -21.02351 -20.07887 -17.96484 -17.34706 -16.59429 -16.56883 -16.08629 -15.20154 -14.34636 -14.16728 -13.94256 -13.40353 -13.05669 -12.96505 -12.56248 -12.41810 -12.21420 -11.74256 -11.45865 -10.77153 -10.45709 -10.32147 -10.23115 -9.85942 -9.76389 -9.31432 -8.95457 -7.53884 -7.30191 -6.95330 -4.49663 1.77204 2.52054 3.20370 3.23599 3.38754 3.55051 3.62471 4.03605 4.44084 4.62547 4.94517 5.12900 5.20945 5.47151 5.70364 5.81059 5.88118 6.36654 6.41880 6.45202 6.83494 7.03149 7.26710 7.43076 7.55146 7.77461 8.04947 8.23876 8.43387 8.67834 8.73773 10.05358 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.013859 C = 0.008566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.071532 B = 2019.859680 C = 3267.970645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.089 3.911 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.249 1.249 7 C -0.431 4.431 8 H 0.099 0.901 9 C 0.105 3.895 10 C -0.223 4.223 11 C 0.108 3.892 12 N -0.520 5.520 13 C 0.244 3.756 14 N -0.607 5.607 15 H 0.411 0.589 16 C -0.058 4.058 17 C -0.049 4.049 18 C -0.213 4.213 19 C 0.329 3.671 20 F -0.219 7.219 21 F -0.187 7.187 22 H 0.287 0.713 23 H 0.115 0.885 24 H 0.202 0.798 25 H 0.108 0.892 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.696 -3.131 -0.734 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.132 4.132 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.173 1.173 7 C -0.459 4.459 8 H 0.117 0.883 9 C 0.100 3.900 10 C -0.246 4.246 11 C -0.007 4.007 12 N -0.243 5.243 13 C -0.043 4.043 14 N -0.221 5.221 15 H 0.247 0.753 16 C -0.163 4.163 17 C -0.069 4.069 18 C -0.216 4.216 19 C 0.275 3.725 20 F -0.201 7.201 21 F -0.168 7.168 22 H 0.097 0.903 23 H 0.133 0.867 24 H 0.218 0.782 25 H 0.126 0.874 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.002 -2.356 -1.126 9.373 hybrid contribution 1.114 -0.093 0.585 1.262 sum 10.116 -2.449 -0.542 10.422 Atomic orbital electron populations 1.69683 1.08037 1.30467 1.34243 1.26089 0.94729 1.01669 0.90666 0.86307 0.80569 0.79661 0.79526 1.19064 1.21966 1.17251 1.19467 0.92172 0.96582 1.37651 0.88289 1.17101 0.92887 0.89964 0.90034 1.20074 0.92027 1.06933 1.05557 1.18873 0.94182 0.92620 0.95048 1.70461 1.01621 1.28744 1.23506 1.25035 0.96831 0.88223 0.94199 1.42725 1.09458 1.30581 1.39317 0.75287 1.18390 0.85751 1.04947 1.07262 1.18982 0.94345 0.97230 0.96390 1.19775 0.94006 1.03972 1.03841 1.19949 0.77487 0.92139 0.82919 1.92884 1.60226 1.88386 1.78595 1.93028 1.65599 1.84441 1.73732 0.90268 0.86702 0.78154 0.87362 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.16 13.93 55.54 0.77 -20.39 15 2 C 0.09 2.32 5.41 -17.35 -0.09 2.23 15 3 Si 0.91 21.81 24.54 -169.99 -4.17 17.64 15 4 H -0.26 -6.32 6.48 56.52 0.37 -5.96 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.25 -6.23 7.03 56.52 0.40 -5.83 15 7 C -0.43 -11.30 7.76 -37.80 -0.29 -11.59 15 8 H 0.10 2.65 6.82 -52.49 -0.36 2.29 15 9 C 0.11 2.63 5.09 -106.84 -0.54 2.08 15 10 C -0.22 -5.66 7.31 -38.46 -0.28 -5.94 15 11 C 0.11 2.57 7.21 -84.71 -0.61 1.96 15 12 N -0.52 -11.17 11.29 -12.05 -0.14 -11.31 15 13 C 0.24 3.88 12.96 -89.75 -1.16 2.71 15 14 N -0.61 -9.50 6.21 -11.59 -0.07 -9.57 15 15 H 0.41 4.58 8.96 -40.82 -0.37 4.21 15 16 C -0.06 -1.20 7.31 -83.76 -0.61 -1.82 15 17 C -0.05 -0.98 9.35 -39.91 -0.37 -1.35 15 18 C -0.21 -4.72 5.74 -104.30 -0.60 -5.32 15 19 C 0.33 6.46 5.15 36.00 0.19 6.64 15 20 F -0.22 -4.07 16.21 2.25 0.04 -4.03 15 21 F -0.19 -4.17 14.68 2.25 0.03 -4.14 15 22 H 0.29 6.91 8.30 -40.82 -0.34 6.57 15 23 H 0.12 3.00 4.56 -52.49 -0.24 2.76 15 24 H 0.20 2.01 8.06 -52.49 -0.42 1.59 15 25 H 0.11 1.87 7.33 -52.49 -0.38 1.49 15 26 H 0.10 1.73 8.14 -51.93 -0.42 1.31 15 LS Contribution 232.94 15.07 3.51 3.51 Total: -1.00 -30.74 232.94 -5.78 -36.52 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -1.37 Total: 2.17 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -4.39 Total: -10.40 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.57 Total: -41.27 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.17 Total: 17.64 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.74 -5.78 -36.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396075652.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.729 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds