Wall clock time and date at job start Mon Mar 30 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 119.99449 * 2 1 4 4 H 1.48501 * 109.47129 * 270.60895 * 3 2 1 5 5 H 1.48502 * 109.47550 * 30.60553 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.61046 * 3 2 1 7 7 C 1.39871 * 120.00545 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 342.58848 * 7 2 1 9 9 C 1.41323 * 119.99980 * 162.59027 * 7 2 1 10 10 C 1.40357 * 120.01260 * 329.89232 * 9 7 2 11 11 C 1.39107 * 119.41560 * 180.02562 * 10 9 7 12 12 N 1.35944 * 133.44845 * 180.02562 * 11 10 9 13 13 C 1.30063 * 109.54273 * 179.97438 * 12 11 10 14 14 N 1.36118 * 110.17805 * 359.77329 * 13 12 11 15 15 H 0.96998 * 126.28635 * 180.27623 * 14 13 12 16 16 C 1.37758 * 107.42719 * 0.36665 * 14 13 12 17 17 C 1.39375 * 133.74317 * 179.97438 * 16 14 13 18 18 C 1.36135 * 120.28924 * 179.68065 * 17 16 14 19 19 C 1.50692 * 119.81924 * 179.97438 * 18 17 16 20 20 F 1.39896 * 109.47324 * 21.57663 * 19 18 17 21 21 F 1.39903 * 109.46914 * 141.57447 * 19 18 17 22 22 H 0.96997 * 120.00485 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.28589 * 0.04560 * 10 9 7 24 24 H 1.08000 * 124.90815 * 180.02562 * 13 12 11 25 25 H 1.07999 * 119.85525 * 359.65305 * 17 16 14 26 26 H 1.08998 * 109.47765 * 261.57154 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4772 2.0540 -1.4000 5 1 1.4465 2.6491 0.7128 6 1 3.5466 1.4367 0.6870 7 6 2.0082 -1.2112 0.0005 8 1 1.5055 -2.1251 0.2808 9 6 3.3729 -1.2393 -0.3656 10 6 3.8719 -0.3054 -1.2870 11 6 5.2171 -0.3447 -1.6390 12 7 5.9860 0.3987 -2.4782 13 6 7.2082 -0.0456 -2.4568 14 7 7.3099 -1.0992 -1.6010 15 1 8.1149 -1.6033 -1.4043 16 6 6.0592 -1.3193 -1.0672 17 6 5.5499 -2.2399 -0.1530 18 6 4.2342 -2.2062 0.1948 19 6 3.6947 -3.2070 1.1838 20 9 4.7464 -3.7152 1.9538 21 9 2.7644 -2.5810 2.0204 22 1 -0.4851 0.8400 -0.0004 23 1 3.2173 0.4372 -1.7185 24 1 8.0252 0.3649 -3.0317 25 1 6.2019 -2.9836 0.2809 26 1 3.2099 -4.0228 0.6476 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396075652.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:30 Heat of formation + Delta-G solvation = -57.580815 kcal Electronic energy + Delta-G solvation = -16610.689576 eV Core-core repulsion = 13517.529200 eV Total energy + Delta-G solvation = -3093.160376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.72408 -47.72057 -42.64636 -38.48867 -35.30256 -33.89958 -31.64248 -31.31673 -27.27524 -26.24353 -23.65426 -22.50716 -21.73950 -19.68320 -19.01101 -18.17196 -18.12664 -17.66690 -17.01377 -15.93116 -15.84627 -15.60599 -14.94736 -14.79080 -14.64296 -14.27911 -14.01773 -13.89769 -13.49562 -13.21423 -12.66549 -12.24511 -12.02292 -11.99598 -11.58051 -11.43059 -11.11252 -10.66153 -9.23638 -8.99933 -8.89629 -6.43850 0.16756 0.71966 1.28212 1.32289 1.44433 2.04034 2.11248 2.28892 2.59968 3.08843 3.35215 3.51643 3.76786 3.88321 4.16660 4.27818 4.44464 4.73290 4.79996 4.83602 5.05082 5.25546 5.55097 5.67962 5.79042 6.00967 6.26757 6.55350 6.80780 6.82444 7.18062 8.16918 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.013859 C = 0.008566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.071532 B = 2019.859680 C = 3267.970645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.059 3.941 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.250 4.250 11 C 0.080 3.920 12 N -0.573 5.573 13 C 0.279 3.721 14 N -0.585 5.585 15 H 0.438 0.562 16 C -0.054 4.054 17 C -0.037 4.037 18 C -0.229 4.229 19 C 0.330 3.670 20 F -0.210 7.210 21 F -0.206 7.206 22 H 0.293 0.707 23 H 0.094 0.906 24 H 0.266 0.734 25 H 0.146 0.854 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.273 -3.777 -1.174 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.157 4.157 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.273 4.273 11 C -0.037 4.037 12 N -0.297 5.297 13 C -0.008 4.008 14 N -0.200 5.200 15 H 0.279 0.721 16 C -0.161 4.161 17 C -0.057 4.057 18 C -0.232 4.232 19 C 0.277 3.723 20 F -0.191 7.191 21 F -0.187 7.187 22 H 0.104 0.896 23 H 0.111 0.889 24 H 0.282 0.718 25 H 0.164 0.836 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.621 -3.022 -1.556 13.071 hybrid contribution 0.377 0.050 0.594 0.706 sum 12.999 -2.973 -0.962 13.369 Atomic orbital electron populations 1.69696 1.08549 1.31204 1.36941 1.26501 0.95162 1.03237 0.90759 0.85636 0.78895 0.78342 0.78731 1.19915 1.20271 1.19380 1.19453 0.93213 0.96191 1.39696 0.89899 1.17222 0.92826 0.90946 0.90114 1.20062 0.93261 1.07253 1.06701 1.19093 0.94261 0.94142 0.96175 1.70446 1.03810 1.30507 1.24913 1.26250 0.96454 0.86115 0.91952 1.42717 1.08814 1.30414 1.38048 0.72051 1.18540 0.87313 1.03778 1.06496 1.19319 0.93913 0.97223 0.95282 1.20047 0.94732 1.03890 1.04485 1.20127 0.77425 0.92350 0.82399 1.92895 1.59791 1.88068 1.78371 1.92992 1.66430 1.84986 1.74311 0.89628 0.88858 0.71828 0.83638 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.20 13.93 21.81 0.30 -45.90 15 2 C 0.06 3.25 5.41 85.23 0.46 3.71 15 3 Si 0.96 46.89 24.54 68.60 1.68 48.57 15 4 H -0.27 -13.46 6.48 99.48 0.64 -12.82 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 6 H -0.27 -13.83 7.03 99.48 0.70 -13.14 15 7 C -0.46 -24.94 7.76 23.42 0.18 -24.76 15 8 H 0.08 4.66 6.82 -2.91 -0.02 4.64 15 9 C 0.09 4.76 5.09 -21.30 -0.11 4.65 15 10 C -0.25 -12.94 7.31 22.99 0.17 -12.77 15 11 C 0.08 3.68 7.21 39.37 0.28 3.97 15 12 N -0.57 -23.21 11.29 -192.05 -2.17 -25.38 15 13 C 0.28 7.40 12.96 180.04 2.33 9.74 15 14 N -0.58 -15.18 6.21 -190.57 -1.18 -16.37 15 15 H 0.44 6.92 8.96 -92.71 -0.83 6.09 15 16 C -0.05 -2.06 7.31 39.14 0.29 -1.77 15 17 C -0.04 -1.37 9.35 22.05 0.21 -1.17 15 18 C -0.23 -9.87 5.74 -19.65 -0.11 -9.99 15 19 C 0.33 12.54 5.15 71.23 0.37 12.90 15 20 F -0.21 -7.20 16.21 44.97 0.73 -6.48 15 21 F -0.21 -9.27 14.68 44.97 0.66 -8.61 15 22 H 0.29 14.71 8.30 -92.71 -0.77 13.94 15 23 H 0.09 5.10 4.56 -2.91 -0.01 5.09 15 24 H 0.27 3.31 8.06 -2.91 -0.02 3.29 15 25 H 0.15 4.30 7.33 -2.91 -0.02 4.28 15 26 H 0.14 4.29 8.14 -2.39 -0.02 4.27 15 Total: -1.00 -70.24 232.94 4.44 -65.80 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 0.35 Total: 3.84 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 4.07 Total: -15.48 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -3.05 Total: -87.64 kcal Atomic # 9 Polarization: -16.47 SS G_CDS: 1.39 Total: -15.08 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.68 Total: 48.57 kcal Total: -70.24 4.44 -65.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396075652.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.216 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds