Wall clock time and date at job start Mon Mar 30 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86807 * 119.99935 * 2 1 4 4 H 1.48497 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47066 * 300.00008 * 3 2 1 6 6 H 1.48493 * 109.47215 * 60.00042 * 3 2 1 7 7 C 1.39945 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00282 * 163.12190 * 7 2 1 9 9 C 1.41330 * 119.99909 * 342.84952 * 7 2 1 10 10 C 1.40724 * 120.25271 * 334.52264 * 9 7 2 11 11 C 1.36580 * 119.87968 * 179.71708 * 10 9 7 12 12 C 1.50695 * 119.79171 * 180.30123 * 11 10 9 13 13 C 1.53002 * 109.46712 * 270.25987 * 12 11 10 14 14 C 1.50707 * 109.46947 * 179.97438 * 13 12 11 15 15 O 1.20758 * 119.99564 * 124.99790 * 14 13 12 16 16 C 1.38686 * 120.41652 * 0.55751 * 11 10 9 17 17 C 1.38555 * 120.52262 * 359.72341 * 16 11 10 18 18 C 1.37861 * 120.10497 * 359.97438 * 17 16 11 19 19 Cl 1.73598 * 120.20670 * 179.97438 * 18 17 16 20 20 H 0.97000 * 119.99809 * 5.03065 * 1 2 3 21 21 H 1.08002 * 120.06224 * 359.97438 * 10 9 7 22 22 H 1.08997 * 109.47701 * 30.25684 * 12 11 10 23 23 H 1.09001 * 109.47438 * 150.26522 * 12 11 10 24 24 H 1.08998 * 109.47235 * 299.99417 * 13 12 11 25 25 H 1.08994 * 109.47349 * 60.00027 * 13 12 11 26 26 H 1.07999 * 119.99993 * 305.00172 * 14 13 12 27 27 H 1.08001 * 119.73792 * 179.69172 * 16 11 10 28 28 H 1.07999 * 119.94624 * 179.97438 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0081 -1.2119 -0.0005 8 1 3.0532 -1.2319 -0.2721 9 6 1.3487 -2.4088 0.3598 10 6 0.2221 -2.3716 1.2024 11 6 -0.4128 -3.5324 1.5411 12 6 -1.6231 -3.4897 2.4380 13 6 -1.1797 -3.5974 3.8983 14 6 -2.3899 -3.5540 4.7953 15 8 -2.5832 -4.4408 5.5919 16 6 0.0524 -4.7507 1.0692 17 6 1.1635 -4.8077 0.2435 18 6 1.8172 -3.6487 -0.1171 19 17 3.2100 -3.7170 -1.1510 20 1 -0.4850 0.8368 -0.0737 21 1 -0.1423 -1.4265 1.5771 22 1 -2.1536 -2.5494 2.2879 23 1 -2.2839 -4.3223 2.1966 24 1 -0.6493 -4.5378 4.0485 25 1 -0.5189 -2.7650 4.1398 26 1 -3.0844 -2.7299 4.7257 27 1 -0.4552 -5.6624 1.3480 28 1 1.5180 -5.7615 -0.1183 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396094640.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:24 Heat of formation + Delta-G solvation = -46.156812 kcal Electronic energy + Delta-G solvation = -14049.196925 eV Core-core repulsion = 11476.035860 eV Total energy + Delta-G solvation = -2573.161065 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99796 -37.94224 -35.19020 -34.18590 -33.01470 -29.80924 -28.96601 -25.45925 -24.25203 -21.30740 -20.98631 -19.73707 -17.27724 -16.17134 -15.62576 -14.99274 -14.90715 -14.53617 -14.02980 -13.60286 -12.90074 -12.60446 -12.32295 -12.20367 -11.70198 -11.47323 -11.21706 -11.03165 -10.83875 -10.51971 -10.15846 -10.05862 -9.89623 -9.39629 -9.33165 -9.28418 -7.59932 -7.33289 -6.89487 -4.50722 2.07441 2.56966 2.75647 3.01177 3.06861 3.09707 3.68721 3.83853 4.41315 4.50692 5.17984 5.36160 5.46540 5.70172 5.93294 6.00927 6.17279 6.26416 6.40924 6.51084 6.88373 7.03266 7.12372 7.33547 7.48346 7.54930 7.76266 7.89700 8.06180 8.41772 8.67352 8.72491 10.02656 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.008395 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.938476 B = 3334.536672 C = 4567.608181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.117 3.883 10 C -0.146 4.146 11 C -0.071 4.071 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.348 3.652 15 O -0.477 6.477 16 C -0.231 4.231 17 C -0.079 4.079 18 C -0.140 4.140 19 Cl -0.121 7.121 20 H 0.282 0.718 21 H 0.126 0.874 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -0.336 2.935 3.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.475 4.475 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.166 4.166 11 C -0.072 4.072 12 C -0.100 4.100 13 C -0.221 4.221 14 C 0.206 3.794 15 O -0.349 6.349 16 C -0.251 4.251 17 C -0.098 4.098 18 C -0.168 4.168 19 Cl -0.093 7.093 20 H 0.093 0.907 21 H 0.143 0.857 22 H 0.091 0.909 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.060 -0.650 3.325 3.965 hybrid contribution 0.516 0.831 -0.381 1.049 sum -1.544 0.181 2.944 3.330 Atomic orbital electron populations 1.69790 1.07634 1.29574 1.34344 1.25954 0.94766 1.01475 0.92009 0.86221 0.81186 0.80559 0.78666 1.18183 1.19837 1.19592 1.19731 0.98524 0.90482 1.38780 0.89355 1.17412 0.91294 0.90779 0.89141 1.20894 0.98423 0.96751 1.00516 1.19101 0.96020 0.93906 0.98133 1.20292 0.96555 1.02078 0.91091 1.22495 0.98214 1.05197 0.96182 1.26208 0.87467 0.86654 0.79116 1.90368 1.73297 1.38349 1.32863 1.20135 1.01118 0.95987 1.07821 1.20392 0.95731 0.95494 0.98222 1.20819 0.95319 0.95368 1.05268 1.98202 1.44122 1.98710 1.68256 0.90654 0.85668 0.90917 0.91997 0.89708 0.88228 0.89240 0.88752 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.82 10.98 55.55 0.61 -18.21 15 2 C 0.08 1.81 5.15 -17.34 -0.09 1.72 15 3 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 15 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 7 C -0.45 -11.22 8.52 -37.77 -0.32 -11.55 15 8 H 0.09 2.21 7.13 -52.49 -0.37 1.84 15 9 C 0.12 2.93 5.57 -106.79 -0.59 2.34 15 10 C -0.15 -3.41 8.27 -39.24 -0.32 -3.74 15 11 C -0.07 -1.46 5.09 -105.06 -0.54 -2.00 15 12 C -0.06 -1.00 5.31 -27.88 -0.15 -1.14 15 13 C -0.18 -2.58 5.77 -27.88 -0.16 -2.74 15 14 C 0.35 4.41 11.19 36.01 0.40 4.81 15 15 O -0.48 -7.79 17.90 6.00 0.11 -7.68 15 16 C -0.23 -4.78 9.70 -39.30 -0.38 -5.16 15 17 C -0.08 -1.73 9.82 -39.60 -0.39 -2.12 15 18 C -0.14 -3.33 6.38 -38.73 -0.25 -3.57 15 19 Cl -0.12 -2.63 27.61 -51.86 -1.43 -4.06 15 20 H 0.28 6.10 8.30 -40.82 -0.34 5.76 15 21 H 0.13 2.96 6.21 -52.49 -0.33 2.64 15 22 H 0.07 1.09 8.08 -51.93 -0.42 0.67 15 23 H 0.06 0.92 8.08 -51.93 -0.42 0.50 15 24 H 0.08 1.29 8.12 -51.93 -0.42 0.87 15 25 H 0.10 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.09 0.83 8.06 -52.49 -0.42 0.41 15 27 H 0.09 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.10 1.92 8.06 -52.49 -0.42 1.50 15 LS Contribution 266.40 15.07 4.01 4.01 Total: -1.00 -26.90 266.40 -7.31 -34.20 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -2.79 Total: 2.13 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.79 Total: -23.15 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.61 Total: -18.21 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.11 Total: -7.68 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.43 Total: -4.06 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.90 -7.31 -34.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396094640.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.953 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds