Wall clock time and date at job start Mon Mar 30 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00198 * 2 1 4 4 H 1.48500 * 109.47127 * 270.00407 * 3 2 1 5 5 H 1.48508 * 109.46906 * 30.00068 * 3 2 1 6 6 H 1.48496 * 109.47259 * 150.00206 * 3 2 1 7 7 C 1.37877 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99431 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00281 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.39870 * 120.08960 * 94.41878 * 10 9 7 12 12 C 1.47163 * 120.16882 * 0.02562 * 11 10 9 13 13 O 1.21259 * 119.99955 * 174.84861 * 12 11 10 14 14 C 1.39835 * 119.65880 * 180.27080 * 11 10 9 15 15 C 1.37912 * 119.82139 * 359.51542 * 14 11 10 16 16 C 1.38388 * 120.17140 * 0.46694 * 15 14 11 17 17 C 1.37868 * 120.08309 * 274.44075 * 10 9 7 18 18 C 1.50696 * 119.91956 * 359.95424 * 17 10 9 19 19 Cl 1.80299 * 109.46885 * 89.99768 * 18 17 10 20 20 H 0.97008 * 120.00138 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46915 * 59.99606 * 9 7 2 22 22 H 1.09006 * 109.47040 * 300.00451 * 9 7 2 23 23 H 1.08003 * 120.00314 * 354.84082 * 12 11 10 24 24 H 1.07994 * 120.08971 * 179.75000 * 14 11 10 25 25 H 1.07997 * 119.91601 * 180.20225 * 15 14 11 26 26 H 1.07994 * 119.82222 * 179.75954 * 16 15 14 27 27 H 1.08992 * 109.47708 * 210.00516 * 18 17 10 28 28 H 1.09006 * 109.47265 * 330.00607 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 6 4.3350 -3.2442 -1.2094 12 6 4.1845 -2.5220 -2.4828 13 8 4.5511 -3.0358 -3.5182 14 6 4.7949 -4.5647 -1.2005 15 6 4.9379 -5.2330 -0.0026 16 6 4.6184 -4.6033 1.1876 17 6 4.1575 -3.2980 1.1866 18 6 3.8126 -2.6219 2.4885 19 17 2.0767 -2.9159 2.8769 20 1 -0.4851 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8745 -0.6800 -0.8911 23 1 3.7474 -1.5344 -2.4952 24 1 5.0410 -5.0586 -2.1288 25 1 5.2961 -6.2518 0.0063 26 1 4.7289 -5.1333 2.1221 27 1 4.4368 -3.0269 3.2848 28 1 3.9882 -1.5498 2.3988 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396094972.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:44 Heat of formation + Delta-G solvation = -27.888090 kcal Electronic energy + Delta-G solvation = -14517.270515 eV Core-core repulsion = 11944.901641 eV Total energy + Delta-G solvation = -2572.368873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.64903 -37.84893 -35.25828 -33.78667 -32.06212 -31.65013 -28.10920 -26.23638 -24.44035 -22.97351 -20.06163 -19.86951 -16.91489 -16.59631 -16.00813 -15.05560 -14.36528 -14.26859 -13.95918 -13.63472 -13.55326 -13.05645 -12.76744 -12.35940 -11.92434 -11.84555 -11.46098 -11.25595 -10.68303 -10.34378 -10.18297 -9.83729 -9.61805 -9.38025 -9.18420 -8.61446 -8.52509 -8.14026 -6.10879 -4.10806 1.02895 1.64979 2.72054 3.19854 3.22322 3.30009 3.32555 4.25307 4.34890 4.78799 4.92502 5.05141 5.18180 5.32962 5.40670 5.53841 5.73259 5.80687 5.93979 6.17396 6.32818 6.46549 6.69911 6.73858 6.78967 7.15579 7.22320 7.55231 7.87698 8.41698 8.97440 9.47307 11.01577 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.012071 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.995046 B = 2318.960838 C = 3403.182935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.042 3.958 11 C -0.200 4.200 12 C 0.391 3.609 13 O -0.483 6.483 14 C -0.053 4.053 15 C -0.161 4.161 16 C -0.068 4.068 17 C -0.125 4.125 18 C 0.012 3.988 19 Cl -0.159 7.159 20 H 0.264 0.736 21 H 0.036 0.964 22 H 0.027 0.973 23 H 0.115 0.885 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -5.448 3.936 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.124 4.124 3 Si 0.692 3.308 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.036 4.036 10 C 0.041 3.959 11 C -0.201 4.201 12 C 0.252 3.748 13 O -0.359 6.359 14 C -0.072 4.072 15 C -0.179 4.179 16 C -0.087 4.087 17 C -0.125 4.125 18 C -0.050 4.050 19 Cl -0.132 7.132 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.131 0.869 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.104 0.896 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.675 -5.610 3.426 11.697 hybrid contribution 0.172 0.866 0.212 0.908 sum 9.847 -4.744 3.639 11.520 Atomic orbital electron populations 1.69872 1.06147 1.26873 1.49879 1.24889 0.94590 0.98468 0.94494 0.87013 0.80488 0.84527 0.78739 1.20084 1.21152 1.19041 1.20706 0.86886 0.95039 1.51679 0.90065 1.19080 0.98690 0.87876 0.97929 1.20425 0.87238 0.97573 0.90636 1.20698 1.07388 0.96164 0.95895 1.24301 0.72892 0.91614 0.85987 1.90426 1.39772 1.70131 1.35539 1.21355 0.94223 0.93401 0.98183 1.20894 1.04593 1.00117 0.92295 1.21173 0.95727 0.93611 0.98145 1.19534 1.03521 0.94931 0.94552 1.22948 0.83955 1.03228 0.94878 1.98745 1.22676 1.97113 1.94691 0.92553 0.94601 0.95460 0.86873 0.85626 0.86070 0.86130 0.89551 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.96 55.43 0.77 -25.00 15 2 C 0.08 2.08 5.47 -17.82 -0.10 1.99 15 3 Si 0.87 19.78 27.47 -169.99 -4.67 15.12 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -5.70 6.54 56.52 0.37 -5.33 15 7 C -0.51 -12.79 9.13 -34.44 -0.31 -13.11 15 8 H 0.08 2.32 7.98 -52.49 -0.42 1.90 15 9 C 0.00 0.02 3.27 -29.04 -0.09 -0.08 15 10 C 0.04 0.79 5.11 -104.15 -0.53 0.26 15 11 C -0.20 -3.63 5.87 -105.07 -0.62 -4.25 15 12 C 0.39 7.20 10.84 34.35 0.37 7.57 15 13 O -0.48 -9.60 17.18 5.58 0.10 -9.51 15 14 C -0.05 -0.85 9.60 -39.10 -0.38 -1.23 15 15 C -0.16 -2.26 10.03 -39.65 -0.40 -2.66 15 16 C -0.07 -0.98 9.69 -39.46 -0.38 -1.36 15 17 C -0.13 -2.09 5.25 -104.69 -0.55 -2.64 15 18 C 0.01 0.19 6.37 36.00 0.23 0.42 15 19 Cl -0.16 -2.99 28.61 -51.86 -1.48 -4.47 15 20 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 21 H 0.04 0.74 5.19 -51.93 -0.27 0.47 15 22 H 0.03 0.55 5.59 -51.93 -0.29 0.26 15 23 H 0.12 2.02 6.35 -52.48 -0.33 1.69 15 24 H 0.13 1.88 7.66 -52.49 -0.40 1.48 15 25 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 26 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 27 H 0.09 1.05 8.08 -51.93 -0.42 0.63 15 28 H 0.10 1.69 6.01 -51.93 -0.31 1.37 15 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -29.24 259.88 -6.58 -35.83 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -2.46 Total: -0.79 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.76 Total: -15.09 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.77 Total: -25.00 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.10 Total: -9.51 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.12 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -1.48 Total: -4.47 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.24 -6.58 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396094972.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.940 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds