Wall clock time and date at job start Mon Mar 30 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46980 * 239.99471 * 3 2 1 5 5 H 1.48493 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47112 * 120.00099 * 3 2 1 7 7 C 1.37884 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.27694 * 7 2 1 10 10 C 1.50696 * 109.47276 * 179.72698 * 9 7 2 11 11 C 1.38436 * 119.91160 * 265.00046 * 10 9 7 12 12 C 1.38375 * 120.34721 * 179.97438 * 11 10 9 13 13 C 1.37906 * 120.17425 * 0.02562 * 12 11 10 14 14 C 1.39836 * 119.82477 * 0.02562 * 13 12 11 15 15 C 1.47168 * 120.17090 * 180.02562 * 14 13 12 16 16 O 1.21251 * 120.00345 * 354.93174 * 15 14 13 17 17 C 1.37865 * 119.91497 * 84.72488 * 10 9 7 18 18 C 1.50697 * 120.08711 * 0.02562 * 17 10 9 19 19 Cl 1.80298 * 109.47376 * 95.03380 * 18 17 10 20 20 H 0.96994 * 119.99951 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47121 * 299.72626 * 9 7 2 22 22 H 1.08995 * 109.47119 * 59.72307 * 9 7 2 23 23 H 1.07997 * 119.82106 * 0.02562 * 11 10 9 24 24 H 1.07999 * 119.91426 * 180.02562 * 12 11 10 25 25 H 1.08002 * 120.08979 * 179.97438 * 13 12 11 26 26 H 1.07999 * 119.99750 * 174.93000 * 15 14 13 27 27 H 1.09005 * 109.46848 * 215.03656 * 18 17 10 28 28 H 1.08996 * 109.47280 * 335.03376 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 -0.0052 10 6 2.2304 -3.6446 -0.0101 11 6 2.5995 -4.2321 -1.2081 12 6 3.4984 -5.2840 -1.2231 13 6 4.0333 -5.7557 -0.0427 14 6 3.6646 -5.1683 1.1716 15 6 4.2311 -5.6652 2.4357 16 8 4.9474 -6.6436 2.4360 17 6 2.7606 -4.1010 1.1778 18 6 2.3617 -3.4564 2.4803 19 17 1.0105 -4.3902 3.2241 20 1 -0.4850 0.8400 -0.0004 21 1 0.6244 -2.5608 0.8845 22 1 0.6245 -2.5530 -0.8954 23 1 2.1844 -3.8668 -2.1357 24 1 3.7819 -5.7368 -2.1617 25 1 4.7344 -6.5770 -0.0560 26 1 4.0089 -5.1584 3.3631 27 1 3.2150 -3.4493 3.1585 28 1 2.0367 -2.4327 2.2945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396095363.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:49 Heat of formation + Delta-G solvation = -36.823192 kcal Electronic energy + Delta-G solvation = -14302.197613 eV Core-core repulsion = 11729.441284 eV Total energy + Delta-G solvation = -2572.756329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72331 -38.03125 -35.59313 -33.71887 -32.25856 -31.47248 -27.56955 -26.34174 -24.55220 -23.16419 -20.53317 -19.67198 -16.81415 -16.48020 -15.96848 -15.13644 -14.61787 -14.46696 -14.23158 -13.62550 -13.49649 -12.91513 -12.74549 -12.48199 -11.78616 -11.60735 -11.27990 -11.20745 -10.72915 -10.66594 -10.21946 -10.02565 -9.70618 -9.62904 -9.44105 -8.55768 -8.52354 -8.07591 -6.17864 -4.24250 0.87403 1.67148 2.71221 2.85385 3.22736 3.28809 3.30740 4.21273 4.36754 4.40767 4.89035 5.12370 5.17913 5.23738 5.49505 5.57022 5.69376 5.88386 6.08149 6.26384 6.46333 6.63395 6.79822 6.84867 7.27599 7.43697 7.53948 7.58674 7.76756 8.12848 8.81377 9.41193 10.91251 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.008158 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.644995 B = 3431.477113 C = 3895.399053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.029 4.029 11 C -0.090 4.090 12 C -0.129 4.129 13 C -0.087 4.087 14 C -0.180 4.180 15 C 0.385 3.615 16 O -0.470 6.470 17 C -0.060 4.060 18 C 0.000 4.000 19 Cl -0.187 7.187 20 H 0.265 0.735 21 H 0.040 0.960 22 H 0.032 0.968 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -6.808 2.299 8.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.006 3.994 10 C -0.029 4.029 11 C -0.108 4.108 12 C -0.147 4.147 13 C -0.105 4.105 14 C -0.182 4.182 15 C 0.245 3.755 16 O -0.345 6.345 17 C -0.060 4.060 18 C -0.062 4.062 19 Cl -0.161 7.161 20 H 0.075 0.925 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.144 0.856 24 H 0.139 0.861 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.850 -7.273 2.372 9.058 hybrid contribution 0.318 1.044 -0.154 1.102 sum 5.167 -6.229 2.218 8.392 Atomic orbital electron populations 1.69937 1.06027 1.27224 1.49230 1.24993 0.94842 0.99225 0.94828 0.86620 0.79593 0.82829 0.78825 1.20141 1.21155 1.20043 1.20959 0.92939 0.89651 1.52509 0.92442 1.18466 0.92511 0.89113 0.99279 1.20612 0.95830 0.95437 0.91042 1.21410 0.96281 0.94698 0.98445 1.21114 0.98151 0.97717 0.97724 1.21144 0.98973 0.98883 0.91503 1.20595 1.02223 0.99476 0.95882 1.24077 0.76026 0.82936 0.92452 1.90462 1.29811 1.24269 1.89912 1.19768 0.96517 0.95063 0.94700 1.23450 0.90706 0.99239 0.92768 1.98705 1.54732 1.78042 1.84615 0.92541 0.94183 0.95020 0.85557 0.86091 0.85746 0.88539 0.88837 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 13.29 55.43 0.74 -23.71 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.52 -13.18 8.34 -34.44 -0.29 -13.47 15 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 15 9 C 0.04 1.00 4.41 -29.04 -0.13 0.87 15 10 C -0.03 -0.56 5.06 -104.69 -0.53 -1.09 15 11 C -0.09 -1.57 9.67 -39.46 -0.38 -1.96 15 12 C -0.13 -1.95 10.03 -39.65 -0.40 -2.35 15 13 C -0.09 -1.35 9.60 -39.11 -0.38 -1.73 15 14 C -0.18 -2.92 5.87 -105.06 -0.62 -3.54 15 15 C 0.39 5.70 10.90 34.36 0.37 6.07 15 16 O -0.47 -8.03 17.18 5.58 0.10 -7.93 15 17 C -0.06 -1.05 5.30 -104.15 -0.55 -1.60 15 18 C 0.00 0.00 5.52 36.00 0.20 0.20 15 19 Cl -0.19 -3.04 29.13 -51.86 -1.51 -4.55 15 20 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 21 H 0.04 0.97 6.90 -51.93 -0.36 0.61 15 22 H 0.03 0.79 8.05 -51.93 -0.42 0.37 15 23 H 0.13 2.08 8.06 -52.49 -0.42 1.66 15 24 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.12 1.78 7.66 -52.49 -0.40 1.38 15 26 H 0.10 1.17 6.43 -52.49 -0.34 0.83 15 27 H 0.09 1.20 6.57 -51.93 -0.34 0.86 15 28 H 0.13 2.51 5.91 -51.93 -0.31 2.20 15 LS Contribution 264.30 15.07 3.98 3.98 Total: -1.00 -27.94 264.30 -7.06 -35.00 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -2.55 Total: -0.86 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.79 Total: -17.02 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.74 Total: -23.71 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.10 Total: -7.93 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -1.51 Total: -4.55 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.94 -7.06 -35.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396095363.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.823 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds