Wall clock time and date at job start Mon Mar 30 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46980 * 239.99471 * 3 2 1 5 5 H 1.48493 * 109.47068 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47112 * 120.00099 * 3 2 1 7 7 C 1.37884 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.27694 * 7 2 1 10 10 C 1.50696 * 109.47276 * 179.72698 * 9 7 2 11 11 C 1.38436 * 119.91160 * 265.00046 * 10 9 7 12 12 C 1.38375 * 120.34721 * 179.97438 * 11 10 9 13 13 C 1.37906 * 120.17425 * 0.02562 * 12 11 10 14 14 C 1.39836 * 119.82477 * 0.02562 * 13 12 11 15 15 C 1.47168 * 120.17090 * 180.02562 * 14 13 12 16 16 O 1.21251 * 120.00345 * 354.93174 * 15 14 13 17 17 C 1.37865 * 119.91497 * 84.72488 * 10 9 7 18 18 C 1.50697 * 120.08711 * 0.02562 * 17 10 9 19 19 Cl 1.80298 * 109.47376 * 95.03380 * 18 17 10 20 20 H 0.96994 * 119.99951 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47121 * 299.72626 * 9 7 2 22 22 H 1.08995 * 109.47119 * 59.72307 * 9 7 2 23 23 H 1.07997 * 119.82106 * 0.02562 * 11 10 9 24 24 H 1.07999 * 119.91426 * 180.02562 * 12 11 10 25 25 H 1.08002 * 120.08979 * 179.97438 * 13 12 11 26 26 H 1.07999 * 119.99750 * 174.93000 * 15 14 13 27 27 H 1.09005 * 109.46848 * 215.03656 * 18 17 10 28 28 H 1.08996 * 109.47280 * 335.03376 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 -0.0052 10 6 2.2304 -3.6446 -0.0101 11 6 2.5995 -4.2321 -1.2081 12 6 3.4984 -5.2840 -1.2231 13 6 4.0333 -5.7557 -0.0427 14 6 3.6646 -5.1683 1.1716 15 6 4.2311 -5.6652 2.4357 16 8 4.9474 -6.6436 2.4360 17 6 2.7606 -4.1010 1.1778 18 6 2.3617 -3.4564 2.4803 19 17 1.0105 -4.3902 3.2241 20 1 -0.4850 0.8400 -0.0004 21 1 0.6244 -2.5608 0.8845 22 1 0.6245 -2.5530 -0.8954 23 1 2.1844 -3.8668 -2.1357 24 1 3.7819 -5.7368 -2.1617 25 1 4.7344 -6.5770 -0.0560 26 1 4.0089 -5.1584 3.3631 27 1 3.2150 -3.4493 3.1585 28 1 2.0367 -2.4327 2.2945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396095363.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:49 Heat of formation + Delta-G solvation = -51.137342 kcal Electronic energy + Delta-G solvation = -14302.818321 eV Core-core repulsion = 11729.441284 eV Total energy + Delta-G solvation = -2573.377037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01776 -39.33088 -36.89068 -35.49890 -33.66300 -33.04119 -29.23164 -27.71918 -25.88140 -24.91082 -21.81559 -21.07530 -18.48154 -18.03140 -17.31492 -16.55693 -16.31383 -15.78928 -15.52904 -14.90896 -14.76644 -14.39244 -14.24316 -14.15394 -13.27400 -13.22027 -12.82779 -12.75629 -12.44224 -12.35712 -11.69587 -11.55040 -11.35442 -11.16548 -10.72483 -10.54937 -9.81833 -9.52362 -8.16891 -6.29520 -0.39054 0.34047 1.43979 1.44811 1.48105 1.53458 1.57241 2.42365 2.95752 3.15314 3.26330 3.60910 3.87492 3.96540 4.24737 4.37817 4.45021 4.55578 4.77289 4.90067 5.07224 5.28079 5.33915 5.42991 5.49671 5.77962 5.91180 5.97519 6.19419 6.36085 6.83479 7.39582 8.91934 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.008158 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.644995 B = 3431.477113 C = 3895.399053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.055 3.945 10 C -0.059 4.059 11 C -0.101 4.101 12 C -0.117 4.117 13 C -0.085 4.085 14 C -0.185 4.185 15 C 0.394 3.606 16 O -0.491 6.491 17 C -0.061 4.061 18 C 0.002 3.998 19 Cl -0.189 7.189 20 H 0.264 0.736 21 H 0.021 0.979 22 H 0.002 0.998 23 H 0.127 0.873 24 H 0.156 0.844 25 H 0.142 0.858 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 -7.482 2.630 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.059 4.059 11 C -0.119 4.119 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.186 4.186 15 C 0.255 3.745 16 O -0.366 6.366 17 C -0.062 4.062 18 C -0.060 4.060 19 Cl -0.162 7.162 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.021 0.979 23 H 0.145 0.855 24 H 0.174 0.826 25 H 0.160 0.840 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.704 -7.953 2.704 10.747 hybrid contribution -0.247 1.169 -0.279 1.227 sum 6.457 -6.784 2.425 9.675 Atomic orbital electron populations 1.70061 1.07571 1.27897 1.50855 1.25780 0.95510 1.02599 0.94661 0.85648 0.78373 0.78790 0.79174 1.19693 1.21253 1.18925 1.21255 0.93031 0.90718 1.51255 0.92402 1.18161 0.92746 0.90409 0.96867 1.20367 0.96803 0.95685 0.93038 1.21517 0.97060 0.95554 0.97783 1.21401 0.96520 0.96335 0.99246 1.21488 0.98616 0.98848 0.91400 1.20818 1.01719 0.98880 0.97167 1.24384 0.74927 0.82389 0.92775 1.90468 1.30774 1.25288 1.90073 1.19784 0.96615 0.95463 0.94321 1.23435 0.91591 0.97565 0.93373 1.98704 1.55164 1.77897 1.84458 0.92668 0.96050 0.97946 0.85486 0.82628 0.83989 0.85227 0.85132 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 13.29 21.45 0.28 -52.05 15 2 C 0.01 0.72 5.46 84.66 0.46 1.19 15 3 Si 0.96 41.31 29.54 68.60 2.03 43.34 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 5 H -0.29 -12.36 7.11 99.48 0.71 -11.66 15 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.52 -26.89 8.34 25.60 0.21 -26.67 15 8 H 0.06 2.90 7.74 -2.91 -0.02 2.87 15 9 C 0.05 2.64 4.41 29.10 0.13 2.77 15 10 C -0.06 -2.29 5.06 -19.91 -0.10 -2.39 15 11 C -0.10 -3.45 9.67 22.35 0.22 -3.23 15 12 C -0.12 -3.24 10.03 22.22 0.22 -3.02 15 13 C -0.09 -2.41 9.60 22.58 0.22 -2.19 15 14 C -0.18 -5.53 5.87 -20.15 -0.12 -5.64 15 15 C 0.39 10.43 10.90 70.17 0.77 11.20 15 16 O -0.49 -15.30 17.18 -2.94 -0.05 -15.35 15 17 C -0.06 -2.07 5.30 -19.56 -0.10 -2.17 15 18 C 0.00 0.07 5.52 71.23 0.39 0.46 15 19 Cl -0.19 -5.96 29.13 -2.72 -0.08 -6.04 15 20 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 21 H 0.02 1.08 6.90 -2.38 -0.02 1.07 15 22 H 0.00 0.12 8.05 -2.39 -0.02 0.10 15 23 H 0.13 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 25 H 0.14 3.55 7.66 -2.91 -0.02 3.52 15 26 H 0.13 2.61 6.43 -2.91 -0.02 2.59 15 27 H 0.13 3.01 6.57 -2.38 -0.02 3.00 15 28 H 0.11 3.99 5.91 -2.39 -0.01 3.98 15 Total: -1.00 -60.16 264.30 5.65 -54.51 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.17 Total: 5.31 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 2.30 Total: -29.72 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.28 Total: -52.05 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.05 Total: -15.35 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -5.96 SS G_CDS: -0.08 Total: -6.04 kcal Total: -60.16 5.65 -54.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396095363.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.372 kcal (2) G-P(sol) polarization free energy of solvation -60.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds