Wall clock time and date at job start Mon Mar 30 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48495 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46842 * 300.00372 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00418 * 3 2 1 7 7 C 1.37882 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.37905 * 120.08848 * 258.67393 * 10 9 7 12 12 C 1.38389 * 120.17468 * 180.02562 * 11 10 9 13 13 C 1.38427 * 120.34614 * 359.97438 * 12 11 10 14 14 C 1.37861 * 120.17235 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.08496 * 180.02562 * 14 13 12 16 16 Cl 1.80307 * 109.46622 * 269.99732 * 15 14 13 17 17 C 1.39838 * 120.08873 * 78.65125 * 10 9 7 18 18 C 1.47159 * 120.17067 * 359.97438 * 17 10 9 19 19 O 1.21255 * 120.00111 * 354.61710 * 18 17 10 20 20 H 0.96994 * 120.00241 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47022 * 59.99759 * 9 7 2 22 22 H 1.09001 * 109.47019 * 300.00255 * 9 7 2 23 23 H 1.08004 * 119.91471 * 359.97438 * 11 10 9 24 24 H 1.07996 * 119.82638 * 179.70092 * 12 11 10 25 25 H 1.07999 * 119.90793 * 179.97438 * 13 12 11 26 26 H 1.09000 * 109.47507 * 29.99466 * 15 14 13 27 27 H 1.09000 * 109.47380 * 150.00258 * 15 14 13 28 28 H 1.08002 * 120.00309 * 174.62030 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.5015 -4.3223 -1.1705 12 6 3.4001 -5.3748 -1.1725 13 6 4.0339 -5.7554 -0.0021 14 6 3.7743 -5.0871 1.1754 15 6 4.4658 -5.5028 2.4482 16 17 3.4743 -6.7510 3.2908 17 6 2.8669 -4.0227 1.1858 18 6 2.5840 -3.3041 2.4384 19 8 1.8737 -2.3215 2.4266 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 2.0107 -4.0315 -2.0876 24 1 3.6046 -5.9048 -2.0909 25 1 4.7336 -6.5780 -0.0117 26 1 5.4459 -5.9167 2.2109 27 1 4.5853 -4.6350 3.0969 28 1 3.0092 -3.6518 3.3683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396097817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:40 Heat of formation + Delta-G solvation = -23.756718 kcal Electronic energy + Delta-G solvation = -14438.014142 eV Core-core repulsion = 11865.824419 eV Total energy + Delta-G solvation = -2572.189724 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57334 -37.38504 -35.97212 -33.59306 -32.21620 -31.17902 -27.61132 -26.48267 -24.27300 -22.76347 -20.28946 -19.86605 -16.63789 -16.30840 -15.56715 -15.00550 -14.49277 -14.34944 -13.96405 -13.54711 -13.31318 -13.22270 -12.62408 -12.20540 -11.69126 -11.48861 -11.25198 -11.11458 -10.67025 -10.62123 -10.41242 -10.35463 -9.62116 -9.41014 -8.62580 -8.44030 -8.24147 -8.00899 -5.93812 -3.92763 1.09174 1.68799 2.57546 3.15088 3.34693 3.41577 3.45084 4.32924 4.55087 4.63314 4.76956 4.82186 5.22527 5.33130 5.42491 5.47145 5.77288 5.88984 6.10895 6.26039 6.45739 6.72309 6.87075 6.95962 7.37807 7.59510 7.83862 7.97811 8.29440 8.39608 9.06215 9.66665 11.17837 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032423 B = 0.007402 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.366568 B = 3781.763545 C = 4183.184606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.484 4.484 8 H 0.050 0.950 9 C 0.043 3.957 10 C 0.018 3.982 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.140 4.140 14 C -0.072 4.072 15 C 0.007 3.993 16 Cl -0.181 7.181 17 C -0.168 4.168 18 C 0.342 3.658 19 O -0.387 6.387 20 H 0.259 0.741 21 H 0.022 0.978 22 H 0.055 0.945 23 H 0.125 0.875 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -12.158 2.596 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.006 3.994 10 C 0.017 3.983 11 C -0.148 4.148 12 C -0.115 4.115 13 C -0.158 4.158 14 C -0.073 4.073 15 C -0.055 4.055 16 Cl -0.155 7.155 17 C -0.170 4.170 18 C 0.196 3.804 19 O -0.256 6.256 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.073 0.927 23 H 0.143 0.857 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.345 -11.576 2.667 14.518 hybrid contribution 0.599 0.703 -0.065 0.926 sum 8.944 -10.873 2.602 14.317 Atomic orbital electron populations 1.69949 1.05945 1.26343 1.50985 1.24887 0.94783 0.98848 0.95384 0.86548 0.80010 0.84018 0.77477 1.19934 1.21132 1.21007 1.20751 0.92292 0.89429 1.49738 0.93171 1.18614 0.92659 0.89178 0.98902 1.21101 0.93212 0.93479 0.90476 1.21238 0.98961 0.96050 0.98538 1.21240 0.96024 0.96662 0.97559 1.20705 1.02082 1.00634 0.92386 1.19753 0.97825 0.95914 0.93800 1.23230 0.95086 0.93502 0.93678 1.98730 1.75553 1.60405 1.80808 1.20642 1.00488 0.98595 0.97234 1.23724 0.81282 0.84368 0.90984 1.90760 1.26152 1.20522 1.88150 0.93128 0.95936 0.92722 0.85713 0.86318 0.86370 0.87986 0.87892 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 15 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 15 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 6 H -0.28 -7.09 7.11 56.52 0.40 -6.68 15 7 C -0.48 -13.74 7.47 -34.44 -0.26 -13.99 15 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 15 9 C 0.04 1.12 4.40 -29.04 -0.13 0.99 15 10 C 0.02 0.38 5.12 -104.15 -0.53 -0.16 15 11 C -0.13 -2.36 9.65 -39.65 -0.38 -2.74 15 12 C -0.10 -1.42 10.04 -39.46 -0.40 -1.82 15 13 C -0.14 -1.92 9.69 -39.65 -0.38 -2.31 15 14 C -0.07 -1.07 5.30 -104.15 -0.55 -1.62 15 15 C 0.01 0.08 6.26 36.01 0.23 0.31 15 16 Cl -0.18 -2.24 29.13 -51.86 -1.51 -3.75 15 17 C -0.17 -3.16 5.86 -105.07 -0.62 -3.77 15 18 C 0.34 6.52 10.76 34.35 0.37 6.89 15 19 O -0.39 -9.43 13.03 5.58 0.07 -9.36 15 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.02 0.61 7.99 -51.93 -0.41 0.20 15 22 H 0.06 1.57 6.20 -51.93 -0.32 1.24 15 23 H 0.12 2.16 8.03 -52.48 -0.42 1.74 15 24 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 25 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 26 H 0.10 0.88 8.09 -51.93 -0.42 0.46 15 27 H 0.10 1.04 6.40 -51.93 -0.33 0.71 15 28 H 0.08 1.15 6.46 -52.49 -0.34 0.81 15 LS Contribution 261.63 15.07 3.94 3.94 Total: -1.00 -32.16 261.63 -7.17 -39.33 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: -2.64 Total: -4.48 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.75 Total: -16.51 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -1.51 Total: -3.75 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.16 -7.17 -39.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396097817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.574 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds