Wall clock time and date at job start Mon Mar 30 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48495 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46842 * 300.00372 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00418 * 3 2 1 7 7 C 1.37882 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99791 * 359.97438 * 7 2 1 10 10 C 1.50691 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.37905 * 120.08848 * 258.67393 * 10 9 7 12 12 C 1.38389 * 120.17468 * 180.02562 * 11 10 9 13 13 C 1.38427 * 120.34614 * 359.97438 * 12 11 10 14 14 C 1.37861 * 120.17235 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.08496 * 180.02562 * 14 13 12 16 16 Cl 1.80307 * 109.46622 * 269.99732 * 15 14 13 17 17 C 1.39838 * 120.08873 * 78.65125 * 10 9 7 18 18 C 1.47159 * 120.17067 * 359.97438 * 17 10 9 19 19 O 1.21255 * 120.00111 * 354.61710 * 18 17 10 20 20 H 0.96994 * 120.00241 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47022 * 59.99759 * 9 7 2 22 22 H 1.09001 * 109.47019 * 300.00255 * 9 7 2 23 23 H 1.08004 * 119.91471 * 359.97438 * 11 10 9 24 24 H 1.07996 * 119.82638 * 179.70092 * 12 11 10 25 25 H 1.07999 * 119.90793 * 179.97438 * 13 12 11 26 26 H 1.09000 * 109.47507 * 29.99466 * 15 14 13 27 27 H 1.09000 * 109.47380 * 150.00258 * 15 14 13 28 28 H 1.08002 * 120.00309 * 174.62030 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.5015 -4.3223 -1.1705 12 6 3.4001 -5.3748 -1.1725 13 6 4.0339 -5.7554 -0.0021 14 6 3.7743 -5.0871 1.1754 15 6 4.4658 -5.5028 2.4482 16 17 3.4743 -6.7510 3.2908 17 6 2.8669 -4.0227 1.1858 18 6 2.5840 -3.3041 2.4384 19 8 1.8737 -2.3215 2.4266 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6248 -2.5571 0.8897 23 1 2.0107 -4.0315 -2.0876 24 1 3.6046 -5.9048 -2.0909 25 1 4.7336 -6.5780 -0.0117 26 1 5.4459 -5.9167 2.2109 27 1 4.5853 -4.6350 3.0969 28 1 3.0092 -3.6518 3.3683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396097817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:40 Heat of formation + Delta-G solvation = -43.366909 kcal Electronic energy + Delta-G solvation = -14438.864504 eV Core-core repulsion = 11865.824419 eV Total energy + Delta-G solvation = -2573.040085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99635 -38.90219 -36.94533 -35.46128 -33.71809 -32.74362 -29.38707 -27.66517 -25.94369 -24.51724 -21.63540 -21.32876 -18.51497 -17.99611 -16.97656 -16.59915 -16.01266 -15.63424 -15.36185 -14.87757 -14.76447 -14.39518 -14.36134 -13.99816 -13.27092 -13.12863 -12.85417 -12.64934 -12.56706 -12.37903 -11.68601 -11.50377 -11.33542 -11.23499 -10.59253 -10.10520 -9.73143 -9.48858 -8.14351 -6.20928 -0.21388 0.39940 1.34638 1.36680 1.47905 1.57980 1.73420 2.41234 3.03367 3.20031 3.42028 3.55511 3.86515 4.10309 4.28775 4.42405 4.52779 4.56863 4.77812 4.95053 5.11968 5.29962 5.39563 5.47267 5.54925 5.77354 5.96158 6.05220 6.24312 6.77822 6.90342 7.42507 8.97799 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032423 B = 0.007402 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.366568 B = 3781.763545 C = 4183.184606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.283 1.283 7 C -0.486 4.486 8 H 0.044 0.956 9 C 0.054 3.946 10 C -0.023 4.023 11 C -0.149 4.149 12 C -0.080 4.080 13 C -0.126 4.126 14 C -0.059 4.059 15 C 0.008 3.992 16 Cl -0.188 7.188 17 C -0.192 4.192 18 C 0.349 3.651 19 O -0.454 6.454 20 H 0.260 0.740 21 H -0.008 1.008 22 H 0.018 0.982 23 H 0.118 0.882 24 H 0.159 0.841 25 H 0.166 0.834 26 H 0.142 0.858 27 H 0.115 0.885 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 -14.188 2.739 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.018 3.982 10 C -0.023 4.023 11 C -0.168 4.168 12 C -0.098 4.098 13 C -0.144 4.144 14 C -0.060 4.060 15 C -0.054 4.054 16 Cl -0.162 7.162 17 C -0.193 4.193 18 C 0.207 3.793 19 O -0.326 6.326 20 H 0.069 0.931 21 H 0.010 0.990 22 H 0.036 0.964 23 H 0.136 0.864 24 H 0.177 0.823 25 H 0.183 0.817 26 H 0.160 0.840 27 H 0.133 0.867 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.649 -13.636 2.808 18.153 hybrid contribution -0.347 1.139 -0.117 1.196 sum 11.303 -12.497 2.691 17.064 Atomic orbital electron populations 1.70089 1.07632 1.27209 1.52615 1.25798 0.95666 1.02732 0.95251 0.85507 0.79030 0.79485 0.77675 1.18862 1.20007 1.20883 1.20995 0.92022 0.90823 1.48627 0.93729 1.18231 0.93180 0.91259 0.95563 1.20779 0.94461 0.93722 0.93328 1.21275 1.00631 0.97618 0.97230 1.21652 0.93651 0.94664 0.99814 1.21299 1.01339 1.00651 0.91135 1.20084 0.95883 0.93819 0.96178 1.23440 0.95827 0.94142 0.91975 1.98742 1.76046 1.60610 1.80792 1.20744 1.02022 1.00487 0.96047 1.24538 0.79132 0.82763 0.92852 1.90755 1.29268 1.23539 1.89076 0.93107 0.99014 0.96391 0.86389 0.82343 0.81664 0.84032 0.86712 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.79 13.29 21.45 0.28 -59.50 15 2 C 0.00 0.14 5.46 84.66 0.46 0.60 15 3 Si 0.96 46.94 29.54 68.60 2.03 48.97 15 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.27 -12.87 7.11 99.48 0.71 -12.17 15 6 H -0.28 -13.71 7.11 99.48 0.71 -13.00 15 7 C -0.49 -28.98 7.47 25.60 0.19 -28.79 15 8 H 0.04 2.62 7.74 -2.91 -0.02 2.60 15 9 C 0.05 3.05 4.40 29.10 0.13 3.18 15 10 C -0.02 -0.99 5.12 -19.56 -0.10 -1.09 15 11 C -0.15 -5.40 9.65 22.23 0.21 -5.18 15 12 C -0.08 -2.06 10.04 22.35 0.22 -1.83 15 13 C -0.13 -2.81 9.69 22.23 0.22 -2.60 15 14 C -0.06 -1.53 5.30 -19.56 -0.10 -1.63 15 15 C 0.01 0.14 6.26 71.24 0.45 0.58 15 16 Cl -0.19 -3.95 29.13 -2.72 -0.08 -4.03 15 17 C -0.19 -7.07 5.86 -20.15 -0.12 -7.19 15 18 C 0.35 13.34 10.76 70.16 0.75 14.09 15 19 O -0.45 -23.22 13.03 -2.95 -0.04 -23.26 15 20 H 0.26 15.65 8.31 -92.71 -0.77 14.88 15 21 H -0.01 -0.50 7.99 -2.39 -0.02 -0.52 15 22 H 0.02 1.13 6.20 -2.39 -0.01 1.12 15 23 H 0.12 4.25 8.03 -2.91 -0.02 4.23 15 24 H 0.16 2.83 8.06 -2.91 -0.02 2.81 15 25 H 0.17 2.26 8.06 -2.91 -0.02 2.24 15 26 H 0.14 1.48 8.09 -2.39 -0.02 1.46 15 27 H 0.11 1.79 6.40 -2.39 -0.02 1.77 15 28 H 0.13 3.48 6.46 -2.91 -0.02 3.46 15 Total: -1.00 -76.16 261.63 5.68 -70.48 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: 1.17 Total: -2.79 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 2.31 Total: -29.85 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.28 Total: -59.50 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.04 Total: -23.26 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 17 Polarization: -3.95 SS G_CDS: -0.08 Total: -4.03 kcal Total: -76.16 5.68 -70.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396097817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.111 kcal (2) G-P(sol) polarization free energy of solvation -76.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds