Wall clock time and date at job start Mon Mar 30 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 120.00330 * 2 1 4 4 H 1.48497 * 109.46858 * 274.64416 * 3 2 1 5 5 H 1.48498 * 109.47166 * 34.64482 * 3 2 1 6 6 H 1.48503 * 109.46971 * 154.64331 * 3 2 1 7 7 C 1.39945 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 162.96381 * 7 2 1 9 9 C 1.41397 * 119.99820 * 342.96351 * 7 2 1 10 10 C 1.40735 * 120.24091 * 334.43729 * 9 7 2 11 11 C 1.37606 * 119.77525 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.26018 * 359.97438 * 11 10 9 13 13 C 1.38742 * 120.48686 * 359.73218 * 12 11 10 14 14 Cl 1.73593 * 119.89042 * 180.27732 * 13 12 11 15 15 C 1.37758 * 120.21754 * 0.54798 * 13 12 11 16 16 C 1.50699 * 120.13188 * 179.72525 * 15 13 12 17 17 C 1.52996 * 109.47206 * 269.72980 * 16 15 13 18 18 C 1.50699 * 109.47206 * 179.97438 * 17 16 15 19 19 O 1.20764 * 120.00229 * 124.99740 * 18 17 16 20 20 H 0.97004 * 119.99528 * 0.02562 * 1 2 3 21 21 H 1.08007 * 120.11441 * 359.95593 * 10 9 7 22 22 H 1.07994 * 119.86912 * 180.02562 * 11 10 9 23 23 H 1.08000 * 119.75874 * 180.02562 * 12 11 10 24 24 H 1.08999 * 109.47127 * 149.72501 * 16 15 13 25 25 H 1.09001 * 109.47191 * 29.72683 * 16 15 13 26 26 H 1.08999 * 109.47468 * 59.99730 * 17 16 15 27 27 H 1.09001 * 109.46803 * 299.99941 * 17 16 15 28 28 H 1.07998 * 120.00139 * 304.99673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3917 2.1030 -1.3955 5 1 1.4925 2.6224 0.7959 6 1 3.5856 1.4137 0.5996 7 6 2.0079 -1.2120 0.0005 8 1 3.0524 -1.2327 -0.2735 9 6 1.3474 -2.4094 0.3598 10 6 0.2204 -2.3720 1.2020 11 6 -0.4154 -3.5432 1.5451 12 6 0.0497 -4.7574 1.0642 13 6 1.1561 -4.8063 0.2285 14 17 1.7209 -6.3346 -0.3704 15 6 1.8112 -3.6466 -0.1231 16 6 3.0165 -3.7026 -1.0260 17 6 4.2820 -3.8496 -0.1788 18 6 5.4872 -3.9062 -1.0817 19 8 6.3979 -3.1293 -0.9226 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1441 -1.4274 1.5779 22 1 -1.2806 -3.5162 2.1909 23 1 -0.4558 -5.6716 1.3384 24 1 3.0753 -2.7847 -1.6108 25 1 2.9279 -4.5564 -1.6978 26 1 4.2232 -4.7675 0.4061 27 1 4.3706 -2.9958 0.4930 28 1 5.5365 -4.6415 -1.8711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396099677.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:49 Heat of formation + Delta-G solvation = -44.840153 kcal Electronic energy + Delta-G solvation = -14368.354809 eV Core-core repulsion = 11795.250839 eV Total energy + Delta-G solvation = -2573.103970 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81118 -37.96035 -35.57140 -33.70253 -33.39912 -29.69513 -28.89325 -25.66833 -24.03192 -21.18307 -20.80127 -19.70041 -17.43335 -15.99150 -15.61171 -15.06294 -14.56939 -14.47767 -13.93487 -13.66967 -12.92569 -12.49632 -12.33838 -12.09274 -11.62168 -11.43180 -11.23880 -11.10542 -10.66998 -10.54662 -10.31559 -10.06289 -9.79267 -9.65298 -9.29683 -9.09647 -7.56160 -7.41404 -6.92192 -4.54069 2.28358 2.61191 2.66674 3.01587 3.04589 3.10263 3.17229 3.84166 4.43463 4.70196 5.34520 5.51118 5.73578 5.95245 6.09221 6.16025 6.31415 6.46030 6.69008 6.78044 6.92742 6.93659 7.11021 7.27398 7.57306 7.71119 7.75468 7.84032 8.01446 8.41068 8.69362 8.72614 10.01919 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.010934 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.068110 B = 2560.258075 C = 3947.192828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.125 3.875 10 C -0.159 4.159 11 C -0.097 4.097 12 C -0.235 4.235 13 C 0.012 3.988 14 Cl -0.124 7.124 15 C -0.191 4.191 16 C -0.048 4.048 17 C -0.182 4.182 18 C 0.348 3.652 19 O -0.476 6.476 20 H 0.283 0.717 21 H 0.122 0.878 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -4.618 -0.632 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.122 3.878 10 C -0.178 4.178 11 C -0.115 4.115 12 C -0.255 4.255 13 C -0.014 4.014 14 Cl -0.096 7.096 15 C -0.193 4.193 16 C -0.085 4.085 17 C -0.220 4.220 18 C 0.206 3.794 19 O -0.348 6.348 20 H 0.094 0.906 21 H 0.140 0.860 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.635 -4.159 -0.613 4.961 hybrid contribution 0.037 0.508 -0.027 0.510 sum 2.672 -3.651 -0.640 4.569 Atomic orbital electron populations 1.69811 1.07653 1.29592 1.34099 1.25937 0.94732 1.01507 0.92010 0.86314 0.80925 0.80473 0.79303 1.19396 1.19915 1.18138 1.19607 0.98062 0.90696 1.39756 0.89769 1.17347 0.90987 0.90855 0.88609 1.21411 0.98966 0.97021 1.00422 1.20619 0.98732 0.92538 0.99648 1.20217 1.00632 0.97298 1.07349 1.20438 0.97472 0.83455 1.00029 1.98245 1.89628 1.33693 1.87999 1.19353 1.01511 0.91788 1.06632 1.20011 0.90320 1.01991 0.96224 1.22472 0.94871 1.04657 1.00005 1.26176 0.85495 0.82590 0.85180 1.90361 1.38509 1.38076 1.67875 0.90601 0.86031 0.88531 0.88412 0.90799 0.92045 0.89086 0.89322 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.15 10.98 55.55 0.61 -18.54 15 2 C 0.08 1.82 5.15 -17.34 -0.09 1.73 15 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.96 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.45 -11.06 8.13 -37.74 -0.31 -11.37 15 8 H 0.08 2.00 6.60 -52.49 -0.35 1.66 15 9 C 0.12 3.05 5.56 -106.83 -0.59 2.46 15 10 C -0.16 -3.84 8.69 -38.87 -0.34 -4.18 15 11 C -0.10 -2.12 10.02 -39.67 -0.40 -2.52 15 12 C -0.23 -4.98 9.83 -39.25 -0.39 -5.37 15 13 C 0.01 0.25 6.31 -39.57 -0.25 0.00 15 14 Cl -0.12 -2.19 27.27 -51.86 -1.41 -3.60 15 15 C -0.19 -4.20 5.19 -103.88 -0.54 -4.73 15 16 C -0.05 -0.90 4.32 -27.89 -0.12 -1.02 15 17 C -0.18 -3.05 5.76 -27.89 -0.16 -3.21 15 18 C 0.35 5.24 11.19 36.00 0.40 5.64 15 19 O -0.48 -8.90 17.90 6.00 0.11 -8.79 15 20 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 21 H 0.12 3.03 6.22 -52.48 -0.33 2.71 15 22 H 0.10 1.87 8.06 -52.49 -0.42 1.45 15 23 H 0.10 1.88 8.06 -52.49 -0.42 1.46 15 24 H 0.07 1.45 6.77 -51.93 -0.35 1.10 15 25 H 0.06 1.04 6.88 -51.93 -0.36 0.68 15 26 H 0.09 1.44 8.14 -51.93 -0.42 1.01 15 27 H 0.09 1.67 7.86 -51.93 -0.41 1.26 15 28 H 0.09 0.96 8.06 -52.49 -0.42 0.54 15 LS Contribution 262.16 15.07 3.95 3.95 Total: -1.00 -26.20 262.16 -7.17 -33.37 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.62 Total: 3.19 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -2.78 Total: -22.55 kcal Atomic # 7 Polarization: -19.15 SS G_CDS: 0.61 Total: -18.54 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.11 Total: -8.79 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -1.41 Total: -3.60 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.20 -7.17 -33.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396099677.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.472 kcal (2) G-P(sol) polarization free energy of solvation -26.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds