Wall clock time and date at job start Mon Mar 30 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 120.00330 * 2 1 4 4 H 1.48497 * 109.46858 * 274.64416 * 3 2 1 5 5 H 1.48498 * 109.47166 * 34.64482 * 3 2 1 6 6 H 1.48503 * 109.46971 * 154.64331 * 3 2 1 7 7 C 1.39945 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 162.96381 * 7 2 1 9 9 C 1.41397 * 119.99820 * 342.96351 * 7 2 1 10 10 C 1.40735 * 120.24091 * 334.43729 * 9 7 2 11 11 C 1.37606 * 119.77525 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.26018 * 359.97438 * 11 10 9 13 13 C 1.38742 * 120.48686 * 359.73218 * 12 11 10 14 14 Cl 1.73593 * 119.89042 * 180.27732 * 13 12 11 15 15 C 1.37758 * 120.21754 * 0.54798 * 13 12 11 16 16 C 1.50699 * 120.13188 * 179.72525 * 15 13 12 17 17 C 1.52996 * 109.47206 * 269.72980 * 16 15 13 18 18 C 1.50699 * 109.47206 * 179.97438 * 17 16 15 19 19 O 1.20764 * 120.00229 * 124.99740 * 18 17 16 20 20 H 0.97004 * 119.99528 * 0.02562 * 1 2 3 21 21 H 1.08007 * 120.11441 * 359.95593 * 10 9 7 22 22 H 1.07994 * 119.86912 * 180.02562 * 11 10 9 23 23 H 1.08000 * 119.75874 * 180.02562 * 12 11 10 24 24 H 1.08999 * 109.47127 * 149.72501 * 16 15 13 25 25 H 1.09001 * 109.47191 * 29.72683 * 16 15 13 26 26 H 1.08999 * 109.47468 * 59.99730 * 17 16 15 27 27 H 1.09001 * 109.46803 * 299.99941 * 17 16 15 28 28 H 1.07998 * 120.00139 * 304.99673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3917 2.1030 -1.3955 5 1 1.4925 2.6224 0.7959 6 1 3.5856 1.4137 0.5996 7 6 2.0079 -1.2120 0.0005 8 1 3.0524 -1.2327 -0.2735 9 6 1.3474 -2.4094 0.3598 10 6 0.2204 -2.3720 1.2020 11 6 -0.4154 -3.5432 1.5451 12 6 0.0497 -4.7574 1.0642 13 6 1.1561 -4.8063 0.2285 14 17 1.7209 -6.3346 -0.3704 15 6 1.8112 -3.6466 -0.1231 16 6 3.0165 -3.7026 -1.0260 17 6 4.2820 -3.8496 -0.1788 18 6 5.4872 -3.9062 -1.0817 19 8 6.3979 -3.1293 -0.9226 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1441 -1.4274 1.5779 22 1 -1.2806 -3.5162 2.1909 23 1 -0.4558 -5.6716 1.3384 24 1 3.0753 -2.7847 -1.6108 25 1 2.9279 -4.5564 -1.6978 26 1 4.2232 -4.7675 0.4061 27 1 4.3706 -2.9958 0.4930 28 1 5.5365 -4.6415 -1.8711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396099677.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:49 Heat of formation + Delta-G solvation = -57.490564 kcal Electronic energy + Delta-G solvation = -14368.903372 eV Core-core repulsion = 11795.250839 eV Total energy + Delta-G solvation = -2573.652533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22446 -39.57139 -37.13756 -35.45150 -34.93726 -31.42150 -30.51268 -27.41099 -25.56900 -22.93622 -22.13575 -21.32795 -19.19919 -17.45359 -17.17870 -16.61556 -16.10332 -16.06639 -15.44455 -15.21999 -14.59747 -14.08242 -13.85884 -13.72419 -13.29311 -13.07881 -12.75761 -12.72283 -12.26388 -12.11229 -11.90884 -11.70437 -11.39081 -11.23817 -11.02404 -10.49103 -9.32118 -9.11098 -8.67524 -6.36967 0.86117 0.89303 1.13943 1.37903 1.45579 1.50163 1.55685 2.18644 2.67471 3.50980 3.62827 4.13199 4.31263 4.44433 4.55533 4.61670 4.82971 4.93118 5.03658 5.17084 5.21909 5.31366 5.43015 5.58768 5.85985 6.01105 6.05474 6.23857 6.50468 6.61629 6.90014 6.94186 8.28888 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.010934 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.068110 B = 2560.258075 C = 3947.192828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.041 3.959 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.480 4.480 8 H 0.080 0.920 9 C 0.096 3.904 10 C -0.187 4.187 11 C -0.100 4.100 12 C -0.234 4.234 13 C 0.002 3.998 14 Cl -0.088 7.088 15 C -0.196 4.196 16 C -0.043 4.043 17 C -0.177 4.177 18 C 0.363 3.637 19 O -0.514 6.514 20 H 0.289 0.711 21 H 0.104 0.896 22 H 0.119 0.881 23 H 0.121 0.879 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -6.074 -1.245 6.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.509 4.509 8 H 0.098 0.902 9 C 0.093 3.907 10 C -0.206 4.206 11 C -0.118 4.118 12 C -0.254 4.254 13 C -0.024 4.024 14 Cl -0.060 7.060 15 C -0.198 4.198 16 C -0.080 4.080 17 C -0.215 4.215 18 C 0.223 3.777 19 O -0.389 6.389 20 H 0.100 0.900 21 H 0.122 0.878 22 H 0.137 0.863 23 H 0.139 0.861 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.152 -5.637 -1.228 6.574 hybrid contribution -0.175 0.760 0.167 0.797 sum 2.978 -4.877 -1.061 5.812 Atomic orbital electron populations 1.69855 1.08760 1.30594 1.35183 1.26622 0.95364 1.04121 0.91406 0.85375 0.79257 0.76921 0.79400 1.18830 1.18973 1.18790 1.19750 0.98036 0.91735 1.41345 0.90241 1.17680 0.91630 0.92073 0.89277 1.21399 1.00132 0.97260 1.01828 1.20884 0.99131 0.92202 0.99625 1.20557 1.00474 0.97798 1.06546 1.20566 0.97239 0.84862 0.99720 1.98249 1.89228 1.30981 1.87497 1.19714 1.02295 0.91439 1.06367 1.19977 0.89896 1.02168 0.96004 1.22397 0.95188 1.04009 0.99936 1.26564 0.83606 0.82492 0.85044 1.90368 1.39698 1.39973 1.68838 0.90037 0.87801 0.86335 0.86054 0.92347 0.89729 0.87742 0.92339 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.95 10.98 21.83 0.24 -40.71 15 2 C 0.04 1.98 5.15 85.26 0.44 2.41 15 3 Si 0.97 37.64 29.59 68.60 2.03 39.67 15 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 15 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 7 C -0.48 -24.21 8.13 23.46 0.19 -24.02 15 8 H 0.08 3.93 6.60 -2.91 -0.02 3.91 15 9 C 0.10 4.80 5.56 -21.30 -0.12 4.68 15 10 C -0.19 -9.25 8.69 22.73 0.20 -9.05 15 11 C -0.10 -4.33 10.02 22.21 0.22 -4.11 15 12 C -0.23 -9.49 9.83 22.49 0.22 -9.27 15 13 C 0.00 0.10 6.31 22.28 0.14 0.24 15 14 Cl -0.09 -2.82 27.27 -2.72 -0.07 -2.90 15 15 C -0.20 -8.53 5.19 -19.38 -0.10 -8.63 15 16 C -0.04 -1.55 4.32 29.85 0.13 -1.43 15 17 C -0.18 -5.71 5.76 29.85 0.17 -5.54 15 18 C 0.36 10.03 11.19 71.24 0.80 10.83 15 19 O -0.51 -18.57 17.90 -1.46 -0.03 -18.60 15 20 H 0.29 13.12 8.30 -92.71 -0.77 12.35 15 21 H 0.10 5.42 6.22 -2.91 -0.02 5.40 15 22 H 0.12 4.48 8.06 -2.91 -0.02 4.45 15 23 H 0.12 4.30 8.06 -2.91 -0.02 4.27 15 24 H 0.06 2.29 6.77 -2.39 -0.02 2.27 15 25 H 0.08 2.61 6.88 -2.39 -0.02 2.60 15 26 H 0.10 3.06 8.14 -2.39 -0.02 3.04 15 27 H 0.06 2.24 7.86 -2.39 -0.02 2.22 15 28 H 0.14 2.48 8.06 -2.91 -0.02 2.46 15 Total: -1.00 -57.07 262.16 5.63 -51.44 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.17 Total: 14.98 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 2.29 Total: -43.88 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.24 Total: -40.71 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.03 Total: -18.60 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.07 Total: -2.90 kcal Total: -57.07 5.63 -51.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396099677.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.051 kcal (2) G-P(sol) polarization free energy of solvation -57.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds