Wall clock time and date at job start Mon Mar 30 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99598 * 2 1 4 4 H 1.48503 * 109.47260 * 275.41006 * 3 2 1 5 5 H 1.48499 * 109.47274 * 35.41209 * 3 2 1 6 6 H 1.48503 * 109.47017 * 155.40907 * 3 2 1 7 7 C 1.39944 * 120.00447 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99580 * 341.73324 * 7 2 1 9 9 C 1.41397 * 120.00151 * 161.74049 * 7 2 1 10 10 C 1.40744 * 120.23414 * 330.20047 * 9 7 2 11 11 C 1.37606 * 119.76944 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25721 * 359.72232 * 11 10 9 13 13 C 1.50706 * 119.74926 * 180.29904 * 12 11 10 14 14 C 1.53005 * 109.47092 * 265.25369 * 13 12 11 15 15 C 1.50694 * 109.46864 * 180.02562 * 14 13 12 16 16 O 1.20760 * 119.99823 * 125.00491 * 15 14 13 17 17 C 1.38725 * 120.49159 * 0.56191 * 12 11 10 18 18 Cl 1.73603 * 119.89241 * 179.71913 * 17 12 11 19 19 C 1.37757 * 120.22266 * 359.43778 * 17 12 11 20 20 H 0.96995 * 120.00087 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.11404 * 0.05180 * 10 9 7 22 22 H 1.07997 * 119.86879 * 180.02562 * 11 10 9 23 23 H 1.08996 * 109.47649 * 25.25889 * 13 12 11 24 24 H 1.09001 * 109.46616 * 145.26297 * 13 12 11 25 25 H 1.08996 * 109.47299 * 300.00735 * 14 13 12 26 26 H 1.09003 * 109.46607 * 60.00393 * 14 13 12 27 27 H 1.07998 * 120.00554 * 305.00536 * 15 14 13 28 28 H 1.07994 * 120.13901 * 180.25724 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5014 2.6170 0.8113 6 1 3.5922 1.4100 0.5826 7 6 2.0081 -1.2119 0.0005 8 1 1.5089 -2.1235 0.2941 9 6 3.3687 -1.2428 -0.3831 10 6 3.8636 -0.3114 -1.3150 11 6 5.1892 -0.3506 -1.6820 12 6 6.0383 -1.2992 -1.1332 13 6 7.4896 -1.3274 -1.5382 14 6 7.6825 -2.3335 -2.6746 15 6 9.1339 -2.3621 -3.0791 16 8 9.7389 -3.4072 -3.0837 17 6 5.5606 -2.2261 -0.2181 18 17 6.6360 -3.4117 0.4539 19 6 4.2371 -2.2051 0.1635 20 1 -0.4850 0.8400 -0.0004 21 1 3.2053 0.4317 -1.7403 22 1 5.5708 0.3636 -2.3966 23 1 7.7922 -0.3360 -1.8753 24 1 8.0994 -1.6226 -0.6842 25 1 7.3800 -3.3249 -2.3375 26 1 7.0727 -2.0383 -3.5285 27 1 9.6330 -1.4480 -3.3650 28 1 3.8677 -2.9247 0.8790 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396099712.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:20 Heat of formation + Delta-G solvation = -59.657868 kcal Electronic energy + Delta-G solvation = -14059.297128 eV Core-core repulsion = 11485.550614 eV Total energy + Delta-G solvation = -2573.746514 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.25197 -39.70705 -37.28656 -35.98632 -34.56920 -31.56110 -31.34013 -27.80860 -24.73213 -23.40436 -22.18365 -21.67154 -19.47607 -17.58283 -17.23932 -16.57333 -16.21943 -16.05962 -15.64112 -15.17909 -14.82303 -14.42445 -14.21287 -13.94850 -13.46303 -13.02368 -12.83058 -12.74224 -12.57155 -12.18024 -11.79337 -11.73445 -11.54160 -11.41919 -11.03809 -10.49848 -9.52907 -9.30202 -8.92838 -6.55199 0.60743 0.69010 1.14724 1.27845 1.38342 1.44802 1.51421 2.11585 2.50388 3.36321 3.54226 4.06095 4.21858 4.30008 4.45671 4.51886 4.72757 4.81015 4.86856 4.94287 5.11097 5.15410 5.38424 5.40912 5.60974 5.80434 5.86511 6.09838 6.29810 6.55184 6.63450 6.73798 8.15526 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.036996 B = 0.006850 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.653953 B = 4086.901972 C = 4547.451041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.968 3.032 4 H -0.247 1.247 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.484 4.484 8 H 0.053 0.947 9 C 0.082 3.918 10 C -0.243 4.243 11 C -0.056 4.056 12 C -0.189 4.189 13 C -0.049 4.049 14 C -0.186 4.186 15 C 0.362 3.638 16 O -0.518 6.518 17 C 0.009 3.991 18 Cl -0.092 7.092 19 C -0.220 4.220 20 H 0.296 0.704 21 H 0.107 0.893 22 H 0.152 0.848 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.145 0.855 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.883 3.993 -4.647 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.168 4.168 3 Si 0.790 3.210 4 H -0.172 1.172 5 H -0.207 1.207 6 H -0.173 1.173 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.080 3.920 10 C -0.262 4.262 11 C -0.074 4.074 12 C -0.190 4.190 13 C -0.087 4.087 14 C -0.224 4.224 15 C 0.222 3.778 16 O -0.393 6.393 17 C -0.018 4.018 18 Cl -0.063 7.063 19 C -0.240 4.240 20 H 0.106 0.894 21 H 0.125 0.875 22 H 0.169 0.831 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.161 0.839 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.009 3.394 -4.568 14.199 hybrid contribution -0.805 -0.033 0.526 0.962 sum 12.204 3.360 -4.042 13.287 Atomic orbital electron populations 1.69720 1.09395 1.31750 1.36381 1.26907 0.95360 1.04442 0.90124 0.85460 0.79630 0.75913 0.80019 1.17204 1.20705 1.17306 1.19467 0.94424 0.95758 1.41694 0.92867 1.17713 0.92225 0.91702 0.90406 1.21290 0.97324 1.04273 1.03330 1.20896 0.91785 0.96935 0.97794 1.19384 0.97435 0.99335 1.02894 1.20167 0.90992 1.00398 0.97096 1.22527 0.97559 1.01308 1.00999 1.26633 0.89540 0.92768 0.68885 1.90393 1.68500 1.38191 1.42225 1.20750 0.90172 0.92722 0.98129 1.98286 1.65324 1.57632 1.85067 1.20986 0.92131 1.05133 1.05757 0.89386 0.87518 0.83090 0.87407 0.91734 0.92427 0.86878 0.83872 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.18 13.93 21.83 0.30 -44.87 15 2 C 0.05 2.41 5.40 85.26 0.46 2.87 15 3 Si 0.97 39.95 24.52 68.60 1.68 41.64 15 4 H -0.25 -9.28 6.71 99.48 0.67 -8.61 15 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 15 6 H -0.25 -10.44 6.86 99.48 0.68 -9.75 15 7 C -0.48 -26.46 9.57 23.46 0.22 -26.24 15 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 15 9 C 0.08 4.01 5.10 -21.29 -0.11 3.90 15 10 C -0.24 -10.30 7.18 22.73 0.16 -10.14 15 11 C -0.06 -1.91 9.65 22.22 0.21 -1.69 15 12 C -0.19 -6.26 5.16 -19.65 -0.10 -6.36 15 13 C -0.05 -1.15 4.82 29.85 0.14 -1.01 15 14 C -0.19 -4.08 5.77 29.85 0.17 -3.91 15 15 C 0.36 6.86 11.19 71.23 0.80 7.66 15 16 O -0.52 -15.06 17.90 -1.45 -0.03 -15.08 15 17 C 0.01 0.33 6.30 22.27 0.14 0.48 15 18 Cl -0.09 -3.14 27.09 -2.72 -0.07 -3.21 15 19 C -0.22 -10.01 9.57 22.75 0.22 -9.79 15 20 H 0.30 14.06 8.30 -92.71 -0.77 13.29 15 21 H 0.11 4.46 4.73 -2.91 -0.01 4.45 15 22 H 0.15 3.76 8.06 -2.91 -0.02 3.74 15 23 H 0.11 1.74 8.05 -2.39 -0.02 1.72 15 24 H 0.06 1.58 7.10 -2.39 -0.02 1.57 15 25 H 0.06 1.62 7.85 -2.39 -0.02 1.60 15 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.15 1.27 8.06 -2.91 -0.02 1.25 15 28 H 0.10 4.63 8.06 -2.91 -0.02 4.60 15 Total: -1.00 -62.27 260.24 5.32 -56.96 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.11 Total: 8.80 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 2.32 Total: -44.23 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.30 Total: -44.87 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.03 Total: -15.08 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.68 Total: 41.64 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.07 Total: -3.21 kcal Total: -62.27 5.32 -56.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396099712.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.700 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds