Wall clock time and date at job start Mon Mar 30 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47292 * 240.00278 * 3 2 1 5 5 H 1.48497 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47422 * 120.00078 * 3 2 1 7 7 C 1.37879 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.50692 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.38434 * 119.82625 * 265.00464 * 10 9 7 12 12 C 1.37866 * 120.17406 * 180.27863 * 11 10 9 13 13 C 1.39875 * 119.82052 * 359.51109 * 12 11 10 14 14 C 1.47162 * 120.16826 * 180.25303 * 13 12 11 15 15 O 1.21257 * 120.00470 * 0.23511 * 14 13 12 16 16 C 1.39833 * 119.65915 * 0.48866 * 13 12 11 17 17 C 1.37906 * 119.82552 * 359.74444 * 16 13 12 18 18 C 1.50699 * 119.91803 * 180.02562 * 17 16 13 19 19 Cl 1.80299 * 109.47061 * 270.02428 * 18 17 16 20 20 H 0.96997 * 120.00053 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46835 * 60.00019 * 9 7 2 22 22 H 1.09000 * 109.47127 * 300.00981 * 9 7 2 23 23 H 1.08002 * 119.90970 * 359.97438 * 11 10 9 24 24 H 1.07998 * 120.08999 * 179.74726 * 12 11 10 25 25 H 1.08006 * 120.00242 * 180.22792 * 14 13 12 26 26 H 1.08003 * 120.08539 * 179.76998 * 16 13 12 27 27 H 1.09005 * 109.46982 * 30.01400 * 18 17 16 28 28 H 1.08995 * 109.47452 * 150.02014 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6445 -0.0005 11 6 2.5983 -4.2358 -1.1969 12 6 3.4892 -5.2879 -1.2048 13 6 4.0294 -5.7509 -0.0005 14 6 4.9853 -6.8698 -0.0005 15 8 5.3098 -7.3901 -1.0466 16 6 3.6527 -5.1484 1.2038 17 6 2.7567 -4.1001 1.1955 18 6 2.3497 -3.4488 2.4921 19 17 0.9000 -4.2891 3.1576 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5570 0.8896 23 1 2.1825 -3.8752 -2.1262 24 1 3.7721 -5.7509 -2.1386 25 1 5.3980 -7.2276 0.9313 26 1 4.0627 -5.5028 2.1380 27 1 3.1699 -3.5184 3.2067 28 1 2.1117 -2.4004 2.3131 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396100509.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:52 Heat of formation + Delta-G solvation = -39.901874 kcal Electronic energy + Delta-G solvation = -14110.249733 eV Core-core repulsion = 11537.359903 eV Total energy + Delta-G solvation = -2572.889830 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61439 -38.14588 -35.46161 -33.72197 -32.03656 -31.48691 -28.01564 -26.19805 -24.46417 -22.28178 -21.59418 -19.50304 -16.73402 -16.45548 -15.86409 -15.05124 -14.55916 -14.39166 -14.20861 -13.77747 -13.42157 -13.08822 -12.71130 -12.49225 -11.86214 -11.52610 -11.33526 -11.04415 -10.74771 -10.62817 -10.00882 -9.92887 -9.85533 -9.64656 -9.48023 -8.55720 -8.52173 -8.09774 -6.18211 -4.24709 1.01501 1.56099 2.64380 3.02753 3.22809 3.28716 3.30752 4.21599 4.37379 4.40089 4.91502 5.11278 5.17133 5.36310 5.44698 5.57840 5.80893 5.85602 6.10486 6.26703 6.39465 6.58494 6.85864 6.87484 7.26794 7.43034 7.55629 7.58772 7.75992 8.10951 8.80510 9.40413 10.91031 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.007814 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.089772 B = 3582.233932 C = 4370.956861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.036 3.964 10 C 0.026 3.974 11 C -0.144 4.144 12 C -0.049 4.049 13 C -0.230 4.230 14 C 0.388 3.612 15 O -0.477 6.477 16 C -0.048 4.048 17 C -0.129 4.129 18 C 0.014 3.986 19 Cl -0.194 7.194 20 H 0.265 0.735 21 H 0.033 0.967 22 H 0.044 0.956 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.090 0.910 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 -7.998 4.288 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.001 4.001 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.068 4.068 13 C -0.231 4.231 14 C 0.249 3.751 15 O -0.352 6.352 16 C -0.067 4.067 17 C -0.129 4.129 18 C -0.048 4.048 19 Cl -0.167 7.167 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.113 0.887 26 H 0.143 0.857 27 H 0.108 0.892 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.671 -8.212 3.793 10.676 hybrid contribution 0.332 1.022 0.074 1.077 sum 6.002 -7.190 3.867 10.133 Atomic orbital electron populations 1.69938 1.06032 1.27254 1.49127 1.24989 0.94863 0.99240 0.94792 0.86598 0.79572 0.82731 0.78830 1.20098 1.21130 1.20047 1.20895 0.92909 0.89439 1.52685 0.92415 1.18587 0.92696 0.89245 0.99557 1.20952 0.92458 0.92864 0.91169 1.21138 0.99586 0.96869 0.98608 1.21381 0.93644 0.94481 0.97265 1.20592 1.05296 1.02751 0.94420 1.23951 0.78054 0.80395 0.92705 1.90482 1.53890 1.53813 1.37013 1.21145 0.95048 0.93697 0.96808 1.19531 1.00273 0.98482 0.94610 1.23285 0.88106 1.00101 0.93258 1.98697 1.48224 1.82229 1.87568 0.92513 0.94912 0.93758 0.85457 0.85741 0.88711 0.85750 0.89186 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 13.29 55.43 0.74 -23.93 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 15 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.52 -13.31 8.30 -34.44 -0.29 -13.59 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.04 0.84 4.42 -29.04 -0.13 0.71 15 10 C 0.03 0.51 5.08 -104.50 -0.53 -0.02 15 11 C -0.14 -2.61 9.66 -39.65 -0.38 -3.00 15 12 C -0.05 -0.80 9.60 -39.11 -0.38 -1.18 15 13 C -0.23 -3.40 5.87 -105.07 -0.62 -4.02 15 14 C 0.39 5.00 11.46 34.35 0.39 5.39 15 15 O -0.48 -7.74 17.17 5.58 0.10 -7.64 15 16 C -0.05 -0.69 9.44 -39.11 -0.37 -1.06 15 17 C -0.13 -2.20 5.25 -104.69 -0.55 -2.75 15 18 C 0.01 0.23 6.01 36.01 0.22 0.45 15 19 Cl -0.19 -3.22 28.88 -51.86 -1.50 -4.71 15 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.03 0.83 8.05 -51.93 -0.42 0.41 15 22 H 0.04 1.09 6.73 -51.93 -0.35 0.74 15 23 H 0.13 2.23 8.06 -52.49 -0.42 1.81 15 24 H 0.12 1.90 7.65 -52.49 -0.40 1.50 15 25 H 0.10 0.82 8.06 -52.48 -0.42 0.40 15 26 H 0.12 1.35 8.06 -52.48 -0.42 0.93 15 27 H 0.09 1.16 8.08 -51.93 -0.42 0.75 15 28 H 0.13 2.40 6.13 -51.93 -0.32 2.08 15 LS Contribution 267.59 15.07 4.03 4.03 Total: -1.00 -28.59 267.59 -7.10 -35.68 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -2.72 Total: -1.23 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.73 Total: -17.47 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.74 Total: -23.93 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.10 Total: -7.64 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -1.50 Total: -4.71 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.59 -7.10 -35.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396100509.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.220 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds