Wall clock time and date at job start Mon Mar 30 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48500 * 109.47315 * 240.00144 * 3 2 1 5 5 H 1.48501 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46819 * 120.00046 * 3 2 1 7 7 C 1.37876 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.37908 * 120.08753 * 100.92581 * 10 9 7 12 12 C 1.38381 * 120.17322 * 180.28073 * 11 10 9 13 13 C 1.38427 * 120.34453 * 359.48335 * 12 11 10 14 14 C 1.50703 * 119.91362 * 180.23913 * 13 12 11 15 15 Cl 1.80300 * 109.46853 * 270.27789 * 14 13 12 16 16 C 1.37864 * 120.17655 * 0.51315 * 13 12 11 17 17 C 1.39831 * 120.08808 * 280.94859 * 10 9 7 18 18 C 1.47172 * 120.16951 * 359.97438 * 17 10 9 19 19 O 1.21253 * 120.00309 * 5.30939 * 18 17 10 20 20 H 0.96995 * 119.99986 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46941 * 60.00088 * 9 7 2 22 22 H 1.08997 * 109.46907 * 300.00526 * 9 7 2 23 23 H 1.08004 * 119.90985 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.82560 * 179.72364 * 12 11 10 25 25 H 1.08998 * 109.46947 * 30.27781 * 14 13 12 26 26 H 1.08996 * 109.47093 * 150.27683 * 14 13 12 27 27 H 1.08000 * 120.09309 * 179.76572 * 16 13 12 28 28 H 1.08003 * 119.99806 * 185.30832 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.5076 -4.3171 1.1711 12 6 3.4109 -5.3655 1.1742 13 6 4.0348 -5.7545 0.0014 14 6 5.0129 -6.9010 0.0150 15 17 6.6707 -6.2728 0.3433 16 6 3.7682 -5.0923 -1.1780 17 6 2.8605 -4.0282 -1.1884 18 6 2.5701 -3.3159 -2.4431 19 8 1.8580 -2.3345 -2.4324 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.0223 -4.0216 2.0895 24 1 3.6273 -5.8853 2.0958 25 1 4.7317 -7.6092 0.7944 26 1 4.9991 -7.4017 -0.9531 27 1 4.2586 -5.3946 -2.0916 28 1 2.9913 -3.6673 -3.3735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396100573.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:43 Heat of formation + Delta-G solvation = -26.394046 kcal Electronic energy + Delta-G solvation = -14228.623904 eV Core-core repulsion = 11656.319817 eV Total energy + Delta-G solvation = -2572.304087 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47163 -37.51423 -35.89113 -33.63707 -31.98503 -30.93520 -28.70027 -25.52364 -24.23383 -22.52305 -21.32357 -19.43597 -16.30635 -16.26330 -15.50049 -15.08541 -14.42262 -14.32390 -14.18756 -13.52321 -13.41595 -13.07344 -12.78216 -12.19988 -11.72853 -11.37276 -11.25324 -11.04445 -10.66129 -10.60980 -10.39796 -10.36036 -9.61934 -9.42191 -8.63193 -8.50645 -8.22812 -7.97719 -5.92987 -3.91988 1.26338 1.53226 2.57584 3.20493 3.38705 3.41741 3.45433 4.32676 4.56317 4.66663 4.75160 4.91749 5.21898 5.30211 5.38812 5.46456 5.82103 5.88047 6.09643 6.29781 6.38376 6.70691 6.89085 6.95632 7.36730 7.58986 7.83641 7.98658 8.33106 8.40531 9.06721 9.67503 11.18574 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.006440 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.158460 B = 4346.789271 C = 4491.035846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.485 4.485 8 H 0.049 0.951 9 C 0.042 3.958 10 C 0.030 3.970 11 C -0.142 4.142 12 C -0.072 4.072 13 C -0.157 4.157 14 C 0.022 3.978 15 Cl -0.190 7.190 16 C -0.054 4.054 17 C -0.192 4.192 18 C 0.347 3.653 19 O -0.393 6.393 20 H 0.260 0.740 21 H 0.056 0.944 22 H 0.022 0.978 23 H 0.126 0.874 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -14.182 -1.102 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.523 4.523 8 H 0.068 0.932 9 C 0.006 3.994 10 C 0.029 3.971 11 C -0.160 4.160 12 C -0.091 4.091 13 C -0.157 4.157 14 C -0.040 4.040 15 Cl -0.164 7.164 16 C -0.073 4.073 17 C -0.193 4.193 18 C 0.201 3.799 19 O -0.262 6.262 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.144 0.856 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.140 0.860 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.673 -13.467 -1.075 15.537 hybrid contribution 0.736 0.801 0.098 1.092 sum 8.410 -12.666 -0.978 15.235 Atomic orbital electron populations 1.69930 1.05943 1.26567 1.50891 1.24878 0.94794 0.98843 0.95341 0.86657 0.79569 0.83246 0.78512 1.20304 1.21299 1.20384 1.20670 0.92268 0.89388 1.49973 0.93233 1.18636 0.92699 0.89210 0.98898 1.21197 0.92528 0.92709 0.90626 1.21146 0.99704 0.96442 0.98664 1.21115 0.95118 0.96183 0.96671 1.19364 1.01290 1.00470 0.94620 1.23068 0.81373 0.95353 1.04252 1.98731 1.30877 1.90035 1.96755 1.21082 0.95454 0.93661 0.97108 1.20854 1.01753 0.99453 0.97209 1.23713 0.80868 0.84306 0.90993 1.90758 1.26420 1.20671 1.88347 0.93033 0.92618 0.96003 0.85638 0.86451 0.88554 0.88507 0.85978 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 15 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 15 3 Si 0.89 22.48 29.54 -169.99 -5.02 17.45 15 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.48 -13.85 7.52 -34.44 -0.26 -14.11 15 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 15 9 C 0.04 1.09 4.40 -29.04 -0.13 0.96 15 10 C 0.03 0.63 5.12 -104.15 -0.53 0.10 15 11 C -0.14 -2.56 9.65 -39.65 -0.38 -2.94 15 12 C -0.07 -1.06 9.69 -39.46 -0.38 -1.45 15 13 C -0.16 -2.12 5.25 -104.69 -0.55 -2.67 15 14 C 0.02 0.22 6.78 36.01 0.24 0.46 15 15 Cl -0.19 -2.32 29.13 -51.86 -1.51 -3.83 15 16 C -0.05 -0.79 9.44 -39.11 -0.37 -1.16 15 17 C -0.19 -3.53 5.86 -105.06 -0.62 -4.14 15 18 C 0.35 6.42 11.39 34.36 0.39 6.81 15 19 O -0.39 -9.46 13.05 5.58 0.07 -9.39 15 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 21 H 0.06 1.58 6.17 -51.92 -0.32 1.26 15 22 H 0.02 0.59 7.99 -51.93 -0.42 0.18 15 23 H 0.13 2.19 8.03 -52.48 -0.42 1.77 15 24 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 25 H 0.10 0.79 8.09 -51.93 -0.42 0.37 15 26 H 0.10 0.78 8.08 -51.93 -0.42 0.36 15 27 H 0.12 1.37 8.06 -52.49 -0.42 0.94 15 28 H 0.08 1.09 8.06 -52.48 -0.42 0.67 15 LS Contribution 265.46 15.07 4.00 4.00 Total: -1.00 -32.47 265.46 -7.21 -39.68 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -2.81 Total: -5.01 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.68 Total: -16.42 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.51 Total: -3.83 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.47 -7.21 -39.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396100573.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.286 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds