Wall clock time and date at job start Mon Mar 30 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48500 * 109.47315 * 240.00144 * 3 2 1 5 5 H 1.48501 * 109.46807 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46819 * 120.00046 * 3 2 1 7 7 C 1.37876 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00423 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.37908 * 120.08753 * 100.92581 * 10 9 7 12 12 C 1.38381 * 120.17322 * 180.28073 * 11 10 9 13 13 C 1.38427 * 120.34453 * 359.48335 * 12 11 10 14 14 C 1.50703 * 119.91362 * 180.23913 * 13 12 11 15 15 Cl 1.80300 * 109.46853 * 270.27789 * 14 13 12 16 16 C 1.37864 * 120.17655 * 0.51315 * 13 12 11 17 17 C 1.39831 * 120.08808 * 280.94859 * 10 9 7 18 18 C 1.47172 * 120.16951 * 359.97438 * 17 10 9 19 19 O 1.21253 * 120.00309 * 5.30939 * 18 17 10 20 20 H 0.96995 * 119.99986 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.46941 * 60.00088 * 9 7 2 22 22 H 1.08997 * 109.46907 * 300.00526 * 9 7 2 23 23 H 1.08004 * 119.90985 * 359.97438 * 11 10 9 24 24 H 1.07997 * 119.82560 * 179.72364 * 12 11 10 25 25 H 1.08998 * 109.46947 * 30.27781 * 14 13 12 26 26 H 1.08996 * 109.47093 * 150.27683 * 14 13 12 27 27 H 1.08000 * 120.09309 * 179.76572 * 16 13 12 28 28 H 1.08003 * 119.99806 * 185.30832 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.5076 -4.3171 1.1711 12 6 3.4109 -5.3655 1.1742 13 6 4.0348 -5.7545 0.0014 14 6 5.0129 -6.9010 0.0150 15 17 6.6707 -6.2728 0.3433 16 6 3.7682 -5.0923 -1.1780 17 6 2.8605 -4.0282 -1.1884 18 6 2.5701 -3.3159 -2.4431 19 8 1.8580 -2.3345 -2.4324 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.0223 -4.0216 2.0895 24 1 3.6273 -5.8853 2.0958 25 1 4.7317 -7.6092 0.7944 26 1 4.9991 -7.4017 -0.9531 27 1 4.2586 -5.3946 -2.0916 28 1 2.9913 -3.6673 -3.3735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396100573.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:42 Heat of formation + Delta-G solvation = -46.272355 kcal Electronic energy + Delta-G solvation = -14229.485892 eV Core-core repulsion = 11656.319817 eV Total energy + Delta-G solvation = -2573.166075 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.87057 -38.96880 -36.82780 -35.47207 -33.67625 -32.26358 -30.33165 -27.03704 -25.68818 -24.20706 -22.79324 -20.77782 -18.51140 -17.62967 -16.94302 -16.53325 -16.07902 -15.52694 -15.38688 -14.91841 -14.84002 -14.37971 -14.17785 -14.03156 -13.33913 -13.17141 -12.84852 -12.59202 -12.52360 -12.31840 -11.63300 -11.53304 -11.27567 -11.21254 -10.58741 -10.07908 -9.79315 -9.43119 -8.14594 -6.21035 -0.07908 0.34427 1.34142 1.38297 1.44921 1.53148 1.92961 2.41166 3.04584 3.19655 3.52581 3.67738 3.90463 4.19782 4.27281 4.37564 4.58675 4.65664 4.77524 4.97968 5.08453 5.31488 5.37829 5.46690 5.53745 5.77234 5.98013 6.04391 6.24128 6.82404 6.96288 7.42187 8.96974 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.006440 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.158460 B = 4346.789271 C = 4491.035846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.489 4.489 8 H 0.041 0.959 9 C 0.054 3.946 10 C -0.012 4.012 11 C -0.159 4.159 12 C -0.060 4.060 13 C -0.145 4.145 14 C 0.026 3.974 15 Cl -0.205 7.205 16 C -0.038 4.038 17 C -0.212 4.212 18 C 0.352 3.648 19 O -0.463 6.463 20 H 0.261 0.739 21 H 0.022 0.978 22 H -0.010 1.010 23 H 0.117 0.883 24 H 0.151 0.849 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.167 0.833 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -16.468 -1.584 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.017 3.983 10 C -0.013 4.013 11 C -0.177 4.177 12 C -0.078 4.078 13 C -0.145 4.145 14 C -0.036 4.036 15 Cl -0.179 7.179 16 C -0.056 4.056 17 C -0.213 4.213 18 C 0.211 3.789 19 O -0.336 6.336 20 H 0.069 0.931 21 H 0.040 0.960 22 H 0.009 0.991 23 H 0.135 0.865 24 H 0.169 0.831 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.185 0.815 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.565 -15.783 -1.552 19.056 hybrid contribution -0.085 1.304 0.253 1.332 sum 10.480 -14.479 -1.299 17.921 Atomic orbital electron populations 1.70069 1.07529 1.27340 1.52473 1.25769 0.95680 1.02628 0.95241 0.85645 0.78431 0.79001 0.78819 1.20025 1.20552 1.19093 1.20924 0.91918 0.90967 1.48891 0.94026 1.18247 0.93227 0.91137 0.95676 1.20877 0.93900 0.92983 0.93503 1.21140 1.01245 0.97952 0.97393 1.21451 0.93139 0.94450 0.98802 1.19823 1.00571 1.00516 0.93595 1.23292 0.79103 0.93866 1.07301 1.98744 1.31896 1.90329 1.96894 1.21498 0.93376 0.91390 0.99362 1.21053 1.02925 1.01174 0.96185 1.24699 0.78607 0.82562 0.93057 1.90754 1.29687 1.23863 1.89310 0.93070 0.95963 0.99142 0.86535 0.83122 0.85914 0.85323 0.81514 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.74 13.29 21.45 0.28 -59.45 15 2 C 0.00 0.23 5.46 84.65 0.46 0.69 15 3 Si 0.96 47.39 29.54 68.60 2.03 49.42 15 4 H -0.27 -13.39 7.11 99.48 0.71 -12.68 15 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 15 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 7 C -0.49 -29.33 7.52 25.60 0.19 -29.14 15 8 H 0.04 2.48 7.74 -2.91 -0.02 2.46 15 9 C 0.05 3.00 4.40 29.10 0.13 3.13 15 10 C -0.01 -0.53 5.12 -19.56 -0.10 -0.63 15 11 C -0.16 -5.80 9.65 22.23 0.21 -5.58 15 12 C -0.06 -1.59 9.69 22.35 0.22 -1.38 15 13 C -0.14 -3.25 5.25 -19.91 -0.10 -3.36 15 14 C 0.03 0.37 6.78 71.24 0.48 0.86 15 15 Cl -0.20 -4.10 29.13 -2.72 -0.08 -4.17 15 16 C -0.04 -0.94 9.44 22.58 0.21 -0.73 15 17 C -0.21 -7.59 5.86 -20.15 -0.12 -7.71 15 18 C 0.35 12.78 11.39 70.17 0.80 13.58 15 19 O -0.46 -23.23 13.05 -2.95 -0.04 -23.26 15 20 H 0.26 15.75 8.31 -92.71 -0.77 14.97 15 21 H 0.02 1.38 6.17 -2.38 -0.01 1.36 15 22 H -0.01 -0.58 7.99 -2.39 -0.02 -0.60 15 23 H 0.12 4.27 8.03 -2.91 -0.02 4.25 15 24 H 0.15 2.96 8.06 -2.91 -0.02 2.94 15 25 H 0.12 1.22 8.09 -2.39 -0.02 1.20 15 26 H 0.13 1.15 8.08 -2.39 -0.02 1.13 15 27 H 0.17 2.64 8.06 -2.91 -0.02 2.61 15 28 H 0.15 3.33 8.06 -2.91 -0.02 3.30 15 Total: -1.00 -77.10 265.46 5.74 -71.36 By element: Atomic # 1 Polarization: -4.78 SS G_CDS: 1.16 Total: -3.62 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 2.39 Total: -30.27 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.28 Total: -59.45 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.04 Total: -23.26 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 17 Polarization: -4.10 SS G_CDS: -0.08 Total: -4.17 kcal Total: -77.10 5.74 -71.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396100573.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.090 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds