Wall clock time and date at job start Mon Mar 30 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47328 * 275.41282 * 3 2 1 5 5 H 1.48499 * 109.46946 * 35.41629 * 3 2 1 6 6 H 1.48501 * 109.47074 * 155.41507 * 3 2 1 7 7 C 1.39942 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99493 * 341.72499 * 7 2 1 9 9 C 1.41391 * 120.00373 * 161.72404 * 7 2 1 10 10 C 1.40704 * 120.24012 * 330.20612 * 9 7 2 11 11 C 1.37718 * 119.74022 * 180.02562 * 10 9 7 12 12 Cl 1.73593 * 119.89492 * 179.97438 * 11 10 9 13 13 C 1.38777 * 120.21532 * 359.74590 * 11 10 9 14 14 C 1.38592 * 120.48673 * 0.51681 * 13 11 10 15 15 C 1.50702 * 119.86644 * 179.76353 * 14 13 11 16 16 C 1.52998 * 109.47120 * 269.72022 * 15 14 13 17 17 C 1.50698 * 109.47359 * 180.02562 * 16 15 14 18 18 O 1.20762 * 120.00391 * 125.00294 * 17 16 15 19 19 C 1.37640 * 120.26394 * 359.48062 * 14 13 11 20 20 H 0.97004 * 120.00314 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.13077 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.75413 * 180.27335 * 13 11 10 23 23 H 1.09002 * 109.46969 * 149.72244 * 15 14 13 24 24 H 1.08994 * 109.47655 * 29.72248 * 15 14 13 25 25 H 1.08996 * 109.47385 * 59.99643 * 16 15 14 26 26 H 1.09000 * 109.47298 * 299.99945 * 16 15 14 27 27 H 1.08002 * 119.99806 * 304.99539 * 17 16 15 28 28 H 1.07998 * 120.11728 * 180.23205 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5015 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2924 9 6 3.3684 -1.2426 -0.3845 10 6 3.8631 -0.3108 -1.3155 11 6 5.1899 -0.3503 -1.6826 12 17 5.8044 0.7969 -2.8314 13 6 6.0384 -1.3015 -1.1336 14 6 5.5596 -2.2271 -0.2199 15 6 6.4922 -3.2572 0.3635 16 6 6.4830 -4.5094 -0.5154 17 6 7.4150 -5.5398 0.0683 18 8 7.0085 -6.6491 0.3182 19 6 4.2372 -2.2056 0.1611 20 1 -0.4851 0.8401 0.0004 21 1 3.2048 0.4321 -1.7412 22 1 7.0785 -1.3229 -1.4235 23 1 6.1629 -3.5170 1.3696 24 1 7.5025 -2.8503 0.4057 25 1 6.8122 -4.2497 -1.5215 26 1 5.4727 -4.9164 -0.5575 27 1 8.4466 -5.2861 0.2630 28 1 3.8675 -2.9256 0.8761 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396101302.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:23 Heat of formation + Delta-G solvation = -45.873507 kcal Electronic energy + Delta-G solvation = -13968.624268 eV Core-core repulsion = 11395.475488 eV Total energy + Delta-G solvation = -2573.148780 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12538 -38.22039 -35.76808 -34.46032 -33.04983 -30.37823 -29.31241 -25.46715 -24.69512 -21.26007 -20.88731 -20.43664 -17.31784 -16.30044 -16.09414 -15.10084 -14.90846 -14.68503 -14.27736 -14.00235 -13.06164 -12.86500 -12.68977 -12.42623 -11.98319 -11.87921 -11.24433 -10.99497 -10.92353 -10.79930 -10.36568 -10.25605 -9.93585 -9.88037 -9.52536 -9.25464 -7.78297 -7.68861 -7.09096 -4.66415 1.95710 2.29864 2.39875 2.97035 3.05733 3.12887 3.23818 3.88273 4.22735 4.36430 5.03575 5.13990 5.27309 5.47126 5.68260 5.83949 5.99154 6.04407 6.31159 6.35091 6.40472 6.68104 6.86847 7.07633 7.32055 7.37490 7.47256 7.59838 7.83754 8.16624 8.42164 8.62467 9.92325 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.007854 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.887530 B = 3564.317807 C = 4584.332313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.085 3.915 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.441 4.441 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.233 4.233 11 C 0.021 3.979 12 Cl -0.118 7.118 13 C -0.234 4.234 14 C -0.045 4.045 15 C -0.064 4.064 16 C -0.185 4.185 17 C 0.347 3.653 18 O -0.471 6.471 19 C -0.198 4.198 20 H 0.288 0.712 21 H 0.110 0.890 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 -0.999 -0.764 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.135 4.135 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.469 4.469 8 H 0.113 0.887 9 C 0.097 3.903 10 C -0.253 4.253 11 C -0.005 4.005 12 Cl -0.090 7.090 13 C -0.254 4.254 14 C -0.045 4.045 15 C -0.102 4.102 16 C -0.222 4.222 17 C 0.204 3.796 18 O -0.343 6.343 19 C -0.217 4.217 20 H 0.098 0.902 21 H 0.128 0.872 22 H 0.123 0.877 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.070 -1.416 -0.706 10.193 hybrid contribution 0.186 1.116 -0.265 1.162 sum 10.255 -0.300 -0.971 10.305 Atomic orbital electron populations 1.69681 1.08134 1.30593 1.33785 1.26178 0.94745 1.01831 0.90743 0.86390 0.81432 0.79778 0.79355 1.19140 1.21456 1.16546 1.19502 0.92900 0.96293 1.38173 0.88702 1.17577 0.93124 0.90378 0.89188 1.20957 0.93608 1.06023 1.04735 1.20589 0.93980 0.92377 0.93523 1.98278 1.88332 1.61364 1.61031 1.20048 0.98283 1.00798 1.06227 1.19151 0.94095 0.94975 0.96306 1.20305 0.99195 0.92503 0.98165 1.22495 1.01796 0.96421 1.01519 1.26154 0.94215 0.87155 0.72096 1.90393 1.79993 1.24391 1.39497 1.20989 0.92233 1.04001 1.04511 0.90155 0.87201 0.87691 0.91172 0.91040 0.88271 0.89289 0.89259 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 13.93 55.55 0.77 -19.84 15 2 C 0.09 2.17 5.40 -17.34 -0.09 2.07 15 3 Si 0.90 20.29 24.52 -169.99 -4.17 16.13 15 4 H -0.27 -5.88 6.71 56.52 0.38 -5.50 15 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.24 -5.56 6.86 56.52 0.39 -5.18 15 7 C -0.44 -11.39 9.57 -37.74 -0.36 -11.75 15 8 H 0.10 2.55 8.06 -52.48 -0.42 2.13 15 9 C 0.10 2.42 5.10 -106.83 -0.55 1.88 15 10 C -0.23 -5.45 6.95 -38.84 -0.27 -5.72 15 11 C 0.02 0.45 6.31 -39.57 -0.25 0.20 15 12 Cl -0.12 -2.21 28.95 -51.86 -1.50 -3.71 15 13 C -0.23 -4.44 9.48 -39.25 -0.37 -4.81 15 14 C -0.04 -0.82 5.12 -104.71 -0.54 -1.36 15 15 C -0.06 -0.86 5.32 -27.88 -0.15 -1.01 15 16 C -0.18 -2.26 5.77 -27.88 -0.16 -2.42 15 17 C 0.35 3.84 11.19 36.00 0.40 4.25 15 18 O -0.47 -7.23 17.90 6.00 0.11 -7.12 15 19 C -0.20 -4.21 9.44 -38.87 -0.37 -4.58 15 20 H 0.29 6.72 8.30 -40.82 -0.34 6.38 15 21 H 0.11 2.63 4.73 -52.49 -0.25 2.38 15 22 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 23 H 0.07 0.92 8.08 -51.93 -0.42 0.50 15 24 H 0.07 0.80 8.08 -51.93 -0.42 0.38 15 25 H 0.10 1.13 8.14 -51.93 -0.42 0.70 15 26 H 0.09 1.27 8.12 -51.93 -0.42 0.84 15 27 H 0.09 0.65 8.06 -52.49 -0.42 0.23 15 28 H 0.11 2.14 8.06 -52.49 -0.42 1.72 15 LS Contribution 263.32 15.07 3.97 3.97 Total: -1.00 -27.39 263.32 -6.32 -33.71 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -2.79 Total: 0.13 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.70 Total: -23.25 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.77 Total: -19.84 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.12 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.13 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -1.50 Total: -3.71 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.39 -6.32 -33.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396101302.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.165 kcal (2) G-P(sol) polarization free energy of solvation -27.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds