Wall clock time and date at job start Mon Mar 30 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47328 * 275.41282 * 3 2 1 5 5 H 1.48499 * 109.46946 * 35.41629 * 3 2 1 6 6 H 1.48501 * 109.47074 * 155.41507 * 3 2 1 7 7 C 1.39942 * 120.00463 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99493 * 341.72499 * 7 2 1 9 9 C 1.41391 * 120.00373 * 161.72404 * 7 2 1 10 10 C 1.40704 * 120.24012 * 330.20612 * 9 7 2 11 11 C 1.37718 * 119.74022 * 180.02562 * 10 9 7 12 12 Cl 1.73593 * 119.89492 * 179.97438 * 11 10 9 13 13 C 1.38777 * 120.21532 * 359.74590 * 11 10 9 14 14 C 1.38592 * 120.48673 * 0.51681 * 13 11 10 15 15 C 1.50702 * 119.86644 * 179.76353 * 14 13 11 16 16 C 1.52998 * 109.47120 * 269.72022 * 15 14 13 17 17 C 1.50698 * 109.47359 * 180.02562 * 16 15 14 18 18 O 1.20762 * 120.00391 * 125.00294 * 17 16 15 19 19 C 1.37640 * 120.26394 * 359.48062 * 14 13 11 20 20 H 0.97004 * 120.00314 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.13077 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.75413 * 180.27335 * 13 11 10 23 23 H 1.09002 * 109.46969 * 149.72244 * 15 14 13 24 24 H 1.08994 * 109.47655 * 29.72248 * 15 14 13 25 25 H 1.08996 * 109.47385 * 59.99643 * 16 15 14 26 26 H 1.09000 * 109.47298 * 299.99945 * 16 15 14 27 27 H 1.08002 * 119.99806 * 304.99539 * 17 16 15 28 28 H 1.07998 * 120.11728 * 180.23205 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5015 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2924 9 6 3.3684 -1.2426 -0.3845 10 6 3.8631 -0.3108 -1.3155 11 6 5.1899 -0.3503 -1.6826 12 17 5.8044 0.7969 -2.8314 13 6 6.0384 -1.3015 -1.1336 14 6 5.5596 -2.2271 -0.2199 15 6 6.4922 -3.2572 0.3635 16 6 6.4830 -4.5094 -0.5154 17 6 7.4150 -5.5398 0.0683 18 8 7.0085 -6.6491 0.3182 19 6 4.2372 -2.2056 0.1611 20 1 -0.4851 0.8401 0.0004 21 1 3.2048 0.4321 -1.7412 22 1 7.0785 -1.3229 -1.4235 23 1 6.1629 -3.5170 1.3696 24 1 7.5025 -2.8503 0.4057 25 1 6.8122 -4.2497 -1.5215 26 1 5.4727 -4.9164 -0.5575 27 1 8.4466 -5.2861 0.2630 28 1 3.8675 -2.9256 0.8761 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396101302.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:23 Heat of formation + Delta-G solvation = -61.434659 kcal Electronic energy + Delta-G solvation = -13969.299050 eV Core-core repulsion = 11395.475488 eV Total energy + Delta-G solvation = -2573.823562 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26332 -39.72536 -37.32580 -36.05279 -34.59074 -32.07718 -30.77580 -27.25099 -25.96363 -22.65505 -22.41061 -21.74576 -19.09543 -17.83496 -17.23634 -16.59358 -16.26177 -16.16660 -15.70015 -15.32642 -14.78577 -14.31476 -14.14969 -13.87656 -13.67244 -13.05184 -12.98737 -12.73023 -12.44734 -12.23135 -11.83783 -11.73217 -11.61842 -11.58478 -11.04223 -10.54178 -9.50923 -9.31534 -8.96201 -6.58595 0.58098 0.67310 1.14436 1.24177 1.32757 1.36684 1.43746 2.06596 2.47773 3.34179 3.50737 4.05082 4.16486 4.34415 4.42705 4.54903 4.66483 4.76561 4.80670 4.91988 5.08410 5.14925 5.34154 5.40098 5.61623 5.78417 5.85793 6.14235 6.25892 6.54455 6.61529 6.74605 8.11828 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.007854 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.887530 B = 3564.317807 C = 4584.332313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.053 3.947 3 Si 0.953 3.047 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.083 3.917 10 C -0.250 4.250 11 C 0.006 3.994 12 Cl -0.094 7.094 13 C -0.209 4.209 14 C -0.036 4.036 15 C -0.060 4.060 16 C -0.184 4.184 17 C 0.364 3.636 18 O -0.520 6.520 19 C -0.210 4.210 20 H 0.295 0.705 21 H 0.098 0.902 22 H 0.145 0.855 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.058 0.942 27 H 0.148 0.852 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.563 -0.667 -1.130 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.163 4.163 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.081 3.919 10 C -0.270 4.270 11 C -0.020 4.020 12 Cl -0.065 7.065 13 C -0.228 4.228 14 C -0.036 4.036 15 C -0.097 4.097 16 C -0.222 4.222 17 C 0.224 3.776 18 O -0.394 6.394 19 C -0.229 4.229 20 H 0.105 0.895 21 H 0.116 0.884 22 H 0.163 0.837 23 H 0.092 0.908 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.101 -1.074 -1.078 14.183 hybrid contribution -0.799 0.924 -0.239 1.245 sum 13.302 -0.150 -1.317 13.368 Atomic orbital electron populations 1.69710 1.09081 1.31544 1.36571 1.26736 0.95247 1.03927 0.90353 0.85651 0.80006 0.77179 0.79487 1.18746 1.20031 1.17341 1.19466 0.94421 0.95702 1.41424 0.91983 1.17717 0.92805 0.91705 0.89719 1.20945 0.94860 1.05993 1.05169 1.20804 0.93566 0.93447 0.94194 1.98284 1.87743 1.60539 1.59977 1.20613 0.99739 0.98568 1.03900 1.19661 0.93522 0.95391 0.95033 1.20371 0.99912 0.91453 0.98012 1.22480 1.00972 0.96301 1.02413 1.26633 0.95767 0.85488 0.69752 1.90409 1.81056 1.26362 1.41580 1.21208 0.93630 1.03401 1.04705 0.89466 0.88404 0.83716 0.90848 0.86924 0.86680 0.92343 0.83572 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.86 13.93 21.83 0.30 -45.56 15 2 C 0.05 2.81 5.40 85.26 0.46 3.27 15 3 Si 0.95 42.64 24.52 68.60 1.68 44.32 15 4 H -0.26 -11.38 6.71 99.48 0.67 -10.72 15 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 6 H -0.25 -11.30 6.86 99.48 0.68 -10.62 15 7 C -0.48 -26.37 9.57 23.46 0.22 -26.15 15 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 15 9 C 0.08 4.09 5.10 -21.30 -0.11 3.98 15 10 C -0.25 -11.57 6.95 22.75 0.16 -11.41 15 11 C 0.01 0.25 6.31 22.28 0.14 0.39 15 12 Cl -0.09 -3.21 28.95 -2.72 -0.08 -3.29 15 13 C -0.21 -6.99 9.48 22.48 0.21 -6.78 15 14 C -0.04 -1.19 5.12 -19.92 -0.10 -1.29 15 15 C -0.06 -1.34 5.32 29.85 0.16 -1.18 15 16 C -0.18 -3.82 5.77 29.85 0.17 -3.65 15 17 C 0.36 6.52 11.19 71.24 0.80 7.32 15 18 O -0.52 -14.83 17.90 -1.46 -0.03 -14.85 15 19 C -0.21 -8.87 9.44 22.73 0.21 -8.65 15 20 H 0.29 14.42 8.30 -92.71 -0.77 13.65 15 21 H 0.10 4.71 4.73 -2.91 -0.01 4.70 15 22 H 0.15 3.78 8.06 -2.91 -0.02 3.76 15 23 H 0.07 1.64 8.08 -2.39 -0.02 1.62 15 24 H 0.11 1.69 8.08 -2.39 -0.02 1.67 15 25 H 0.12 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.06 1.58 8.12 -2.39 -0.02 1.56 15 27 H 0.15 1.12 8.06 -2.91 -0.02 1.10 15 28 H 0.11 4.36 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -62.86 263.32 5.31 -57.55 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.10 Total: 5.98 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 2.33 Total: -44.15 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.30 Total: -45.56 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.03 Total: -14.85 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.68 Total: 44.32 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.08 Total: -3.29 kcal Total: -62.86 5.31 -57.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396101302.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.884 kcal (2) G-P(sol) polarization free energy of solvation -62.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds