Wall clock time and date at job start Mon Mar 30 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99687 * 2 1 4 4 H 1.48498 * 109.47348 * 240.00552 * 3 2 1 5 5 H 1.48501 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00330 * 3 2 1 7 7 C 1.39945 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00067 * 159.23511 * 7 2 1 9 9 C 1.41336 * 119.99749 * 339.22931 * 7 2 1 10 10 C 1.40875 * 120.25730 * 315.44186 * 9 7 2 11 11 Cl 1.73598 * 120.14321 * 0.02562 * 10 9 7 12 12 C 1.37769 * 119.70995 * 180.02562 * 10 9 7 13 13 C 1.38584 * 120.23248 * 359.97438 * 12 10 9 14 14 C 1.38664 * 120.52121 * 0.02562 * 13 12 10 15 15 C 1.37601 * 120.28378 * 359.70968 * 14 13 12 16 16 C 1.50701 * 120.11926 * 180.28330 * 15 14 13 17 17 C 1.52997 * 109.47190 * 265.28172 * 16 15 14 18 18 C 1.50701 * 109.47190 * 179.97438 * 17 16 15 19 19 O 1.20761 * 120.00220 * 125.00386 * 18 17 16 20 20 H 0.96993 * 120.00557 * 4.73496 * 1 2 3 21 21 H 1.08001 * 119.88751 * 179.97438 * 12 10 9 22 22 H 1.07994 * 119.73771 * 180.02562 * 13 12 10 23 23 H 1.08000 * 119.85436 * 180.02562 * 14 13 12 24 24 H 1.08996 * 109.47214 * 25.28548 * 16 15 14 25 25 H 1.09009 * 109.47118 * 145.28297 * 16 15 14 26 26 H 1.08996 * 109.47349 * 300.00294 * 17 16 15 27 27 H 1.09000 * 109.46781 * 60.00595 * 17 16 15 28 28 H 1.08007 * 119.99721 * 305.00202 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6965 1.2124 7 6 2.0081 -1.2119 -0.0005 8 1 3.0355 -1.2421 -0.3321 9 6 1.3704 -2.3964 0.4330 10 6 0.5858 -2.3927 1.6030 11 17 0.3962 -0.9314 2.5209 12 6 -0.0304 -3.5538 2.0156 13 6 0.1193 -4.7211 1.2839 14 6 0.8893 -4.7357 0.1308 15 6 1.5098 -3.5870 -0.3037 16 6 2.3407 -3.6055 -1.5609 17 6 3.8096 -3.8323 -1.1981 18 6 4.6403 -3.8514 -2.4553 19 8 5.5823 -3.1042 -2.5681 20 1 -0.4850 0.8371 -0.0693 21 1 -0.6322 -3.5543 2.9124 22 1 -0.3676 -5.6267 1.6144 23 1 0.9984 -5.6514 -0.4313 24 1 1.9984 -4.4108 -2.2107 25 1 2.2373 -2.6519 -2.0788 26 1 4.1519 -3.0270 -0.5482 27 1 3.9129 -4.7858 -0.6803 28 1 4.3933 -4.5335 -3.2555 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396102905.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:32 Heat of formation + Delta-G solvation = -38.591869 kcal Electronic energy + Delta-G solvation = -14477.180098 eV Core-core repulsion = 11904.347074 eV Total energy + Delta-G solvation = -2572.833024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82093 -37.90104 -34.91384 -33.62686 -33.14245 -29.72412 -28.98359 -25.48276 -24.01738 -21.13212 -20.80693 -19.69139 -17.32299 -15.97714 -15.47269 -15.09813 -14.50198 -14.35001 -13.95212 -13.74218 -12.73486 -12.51571 -12.26141 -12.03667 -11.55067 -11.45096 -11.13426 -10.93988 -10.64032 -10.39557 -10.19598 -9.93260 -9.76260 -9.55841 -9.13782 -8.61314 -7.45478 -7.11996 -6.71610 -4.44503 2.26525 2.63382 2.72070 3.12565 3.15010 3.20228 3.87435 4.01996 4.59849 4.67293 5.24757 5.46511 5.69639 5.91880 5.98297 6.09131 6.21236 6.33290 6.53869 6.67403 6.81320 6.96326 7.22736 7.29787 7.55080 7.63740 7.68802 7.88444 8.02344 8.39069 8.72363 8.87189 10.26390 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.012316 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.182056 B = 2272.999066 C = 3542.668277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.095 3.905 3 Si 0.892 3.108 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.479 4.479 8 H 0.084 0.916 9 C 0.132 3.868 10 C -0.076 4.076 11 Cl -0.099 7.099 12 C -0.094 4.094 13 C -0.223 4.223 14 C -0.092 4.092 15 C -0.167 4.167 16 C -0.043 4.043 17 C -0.184 4.184 18 C 0.347 3.653 19 O -0.475 6.475 20 H 0.281 0.719 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -5.197 -1.125 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.129 3.871 10 C -0.103 4.103 11 Cl -0.070 7.070 12 C -0.113 4.113 13 C -0.243 4.243 14 C -0.110 4.110 15 C -0.169 4.169 16 C -0.081 4.081 17 C -0.222 4.222 18 C 0.204 3.796 19 O -0.347 6.347 20 H 0.092 0.908 21 H 0.116 0.884 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.758 -4.491 -1.057 4.937 hybrid contribution -0.001 0.859 0.197 0.882 sum 1.757 -3.631 -0.860 4.124 Atomic orbital electron populations 1.69775 1.07577 1.29640 1.33014 1.25589 0.94418 1.00349 0.92193 0.86592 0.80519 0.81155 0.80069 1.19141 1.20464 1.18683 1.19230 0.99596 0.91009 1.40951 0.89836 1.17167 0.89278 0.92414 0.88289 1.21006 1.08012 0.85367 0.95937 1.98208 1.96473 1.39373 1.72992 1.20534 0.99311 0.92306 0.99187 1.20298 1.07696 0.96773 0.99506 1.20530 0.97907 0.96335 0.96223 1.19632 1.05354 0.94194 0.97675 1.19979 0.90439 1.01883 0.95788 1.22518 0.97439 1.04469 0.97757 1.26178 0.81533 0.80975 0.90884 1.90369 1.26785 1.36500 1.81003 0.90826 0.88385 0.88495 0.88679 0.92673 0.90525 0.89105 0.89232 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.81 11.17 55.55 0.62 -19.19 15 2 C 0.10 2.35 3.75 -17.34 -0.07 2.29 15 3 Si 0.89 19.34 29.61 -169.99 -5.03 14.30 15 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.48 -11.98 7.32 -37.77 -0.28 -12.26 15 8 H 0.08 2.06 6.71 -52.49 -0.35 1.70 15 9 C 0.13 3.23 5.26 -106.79 -0.56 2.66 15 10 C -0.08 -1.84 5.94 -38.76 -0.23 -2.07 15 11 Cl -0.10 -2.35 24.94 -51.86 -1.29 -3.64 15 12 C -0.09 -2.08 9.81 -39.62 -0.39 -2.47 15 13 C -0.22 -4.53 10.05 -39.30 -0.39 -4.92 15 14 C -0.09 -1.81 9.66 -39.66 -0.38 -2.20 15 15 C -0.17 -3.57 5.19 -103.92 -0.54 -4.11 15 16 C -0.04 -0.77 4.78 -27.88 -0.13 -0.90 15 17 C -0.18 -2.90 5.73 -27.88 -0.16 -3.06 15 18 C 0.35 4.95 11.19 36.01 0.40 5.36 15 19 O -0.47 -8.72 17.90 6.00 0.11 -8.61 15 20 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 21 H 0.10 1.97 8.06 -52.49 -0.42 1.55 15 22 H 0.10 1.70 8.06 -52.49 -0.42 1.28 15 23 H 0.10 1.58 8.06 -52.49 -0.42 1.16 15 24 H 0.05 0.81 8.05 -51.93 -0.42 0.39 15 25 H 0.08 1.50 7.31 -51.92 -0.38 1.12 15 26 H 0.09 1.68 7.07 -51.93 -0.37 1.31 15 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.09 0.86 8.06 -52.48 -0.42 0.44 15 LS Contribution 261.44 15.07 3.94 3.94 Total: -1.00 -27.74 261.44 -7.15 -34.89 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -2.77 Total: -0.01 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.73 Total: -21.68 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.62 Total: -19.19 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.11 Total: -8.61 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -1.29 Total: -3.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.74 -7.15 -34.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396102905.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.700 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds