Wall clock time and date at job start Mon Mar 30 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99687 * 2 1 4 4 H 1.48498 * 109.47348 * 240.00552 * 3 2 1 5 5 H 1.48501 * 109.47111 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00330 * 3 2 1 7 7 C 1.39945 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00067 * 159.23511 * 7 2 1 9 9 C 1.41336 * 119.99749 * 339.22931 * 7 2 1 10 10 C 1.40875 * 120.25730 * 315.44186 * 9 7 2 11 11 Cl 1.73598 * 120.14321 * 0.02562 * 10 9 7 12 12 C 1.37769 * 119.70995 * 180.02562 * 10 9 7 13 13 C 1.38584 * 120.23248 * 359.97438 * 12 10 9 14 14 C 1.38664 * 120.52121 * 0.02562 * 13 12 10 15 15 C 1.37601 * 120.28378 * 359.70968 * 14 13 12 16 16 C 1.50701 * 120.11926 * 180.28330 * 15 14 13 17 17 C 1.52997 * 109.47190 * 265.28172 * 16 15 14 18 18 C 1.50701 * 109.47190 * 179.97438 * 17 16 15 19 19 O 1.20761 * 120.00220 * 125.00386 * 18 17 16 20 20 H 0.96993 * 120.00557 * 4.73496 * 1 2 3 21 21 H 1.08001 * 119.88751 * 179.97438 * 12 10 9 22 22 H 1.07994 * 119.73771 * 180.02562 * 13 12 10 23 23 H 1.08000 * 119.85436 * 180.02562 * 14 13 12 24 24 H 1.08996 * 109.47214 * 25.28548 * 16 15 14 25 25 H 1.09009 * 109.47118 * 145.28297 * 16 15 14 26 26 H 1.08996 * 109.47349 * 300.00294 * 17 16 15 27 27 H 1.09000 * 109.46781 * 60.00595 * 17 16 15 28 28 H 1.08007 * 119.99721 * 305.00202 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6965 1.2124 7 6 2.0081 -1.2119 -0.0005 8 1 3.0355 -1.2421 -0.3321 9 6 1.3704 -2.3964 0.4330 10 6 0.5858 -2.3927 1.6030 11 17 0.3962 -0.9314 2.5209 12 6 -0.0304 -3.5538 2.0156 13 6 0.1193 -4.7211 1.2839 14 6 0.8893 -4.7357 0.1308 15 6 1.5098 -3.5870 -0.3037 16 6 2.3407 -3.6055 -1.5609 17 6 3.8096 -3.8323 -1.1981 18 6 4.6403 -3.8514 -2.4553 19 8 5.5823 -3.1042 -2.5681 20 1 -0.4850 0.8371 -0.0693 21 1 -0.6322 -3.5543 2.9124 22 1 -0.3676 -5.6267 1.6144 23 1 0.9984 -5.6514 -0.4313 24 1 1.9984 -4.4108 -2.2107 25 1 2.2373 -2.6519 -2.0788 26 1 4.1519 -3.0270 -0.5482 27 1 3.9129 -4.7858 -0.6803 28 1 4.3933 -4.5335 -3.2555 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396102905.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:32 Heat of formation + Delta-G solvation = -53.150363 kcal Electronic energy + Delta-G solvation = -14477.811402 eV Core-core repulsion = 11904.347074 eV Total energy + Delta-G solvation = -2573.464328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15661 -39.48959 -36.67927 -35.37939 -34.66277 -31.44953 -30.52807 -27.20126 -25.50124 -22.84292 -22.06288 -21.25926 -19.10796 -17.26713 -17.12170 -16.66762 -16.05555 -15.87056 -15.45366 -15.23381 -14.45004 -13.96734 -13.94143 -13.62773 -13.21144 -13.09760 -12.74393 -12.64654 -12.32999 -11.92546 -11.85287 -11.61082 -11.36447 -11.22171 -10.47485 -10.40589 -9.12516 -8.87948 -8.53306 -6.29924 0.88183 0.99893 1.19608 1.35633 1.41482 1.45013 2.10150 2.24055 2.83230 3.50160 3.61558 4.19814 4.34170 4.49934 4.54404 4.68186 4.82796 4.91200 5.01919 5.20700 5.26282 5.39015 5.50380 5.67407 5.87536 5.96781 6.15073 6.35775 6.57312 6.60007 6.95999 7.04737 8.45840 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.012316 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.182056 B = 2272.999066 C = 3542.668277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.068 3.932 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.098 3.902 10 C -0.104 4.104 11 Cl -0.108 7.108 12 C -0.111 4.111 13 C -0.211 4.211 14 C -0.093 4.093 15 C -0.171 4.171 16 C -0.040 4.040 17 C -0.180 4.180 18 C 0.362 3.638 19 O -0.521 6.521 20 H 0.281 0.719 21 H 0.111 0.889 22 H 0.132 0.868 23 H 0.139 0.861 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.115 0.885 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -7.675 -2.030 8.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.149 4.149 3 Si 0.757 3.243 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.095 3.905 10 C -0.132 4.132 11 Cl -0.080 7.080 12 C -0.130 4.130 13 C -0.230 4.230 14 C -0.111 4.111 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.218 4.218 18 C 0.222 3.778 19 O -0.396 6.396 20 H 0.092 0.908 21 H 0.129 0.871 22 H 0.150 0.850 23 H 0.157 0.843 24 H 0.115 0.885 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.664 -6.982 -1.961 7.440 hybrid contribution -0.019 1.401 0.518 1.494 sum 1.645 -5.581 -1.443 5.995 Atomic orbital electron populations 1.69814 1.08359 1.29963 1.35315 1.26018 0.94838 1.02209 0.91852 0.85954 0.79644 0.79023 0.79634 1.18884 1.19605 1.19373 1.19249 0.99324 0.92064 1.42550 0.90965 1.17551 0.90254 0.93675 0.88973 1.21358 1.09268 0.85951 0.96584 1.98186 1.96553 1.40133 1.73090 1.20837 0.99649 0.92354 1.00182 1.20824 1.06266 0.97143 0.98798 1.20994 0.96561 0.97317 0.96214 1.20143 1.04974 0.93696 0.98400 1.19972 0.91086 1.02086 0.94556 1.22454 0.96473 1.04225 0.98608 1.26674 0.79747 0.80471 0.90927 1.90377 1.28934 1.38763 1.81525 0.90833 0.87107 0.85027 0.84296 0.88506 0.93208 0.93069 0.86729 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.35 11.17 21.83 0.24 -42.10 15 2 C 0.07 3.45 3.75 85.26 0.32 3.77 15 3 Si 0.93 40.65 29.61 68.60 2.03 42.69 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.50 -25.87 7.32 23.45 0.17 -25.70 15 8 H 0.07 3.74 6.71 -2.91 -0.02 3.72 15 9 C 0.10 4.84 5.26 -21.27 -0.11 4.73 15 10 C -0.10 -5.08 5.94 22.80 0.14 -4.95 15 11 Cl -0.11 -5.23 24.94 -2.72 -0.07 -5.29 15 12 C -0.11 -4.75 9.81 22.24 0.22 -4.53 15 13 C -0.21 -7.80 10.05 22.45 0.23 -7.58 15 14 C -0.09 -3.30 9.66 22.22 0.21 -3.09 15 15 C -0.17 -6.99 5.19 -19.41 -0.10 -7.09 15 16 C -0.04 -1.31 4.78 29.85 0.14 -1.17 15 17 C -0.18 -5.31 5.73 29.85 0.17 -5.14 15 18 C 0.36 9.30 11.19 71.24 0.80 10.10 15 19 O -0.52 -18.63 17.90 -1.45 -0.03 -18.65 15 20 H 0.28 13.86 8.30 -92.71 -0.77 13.09 15 21 H 0.11 4.31 8.06 -2.91 -0.02 4.29 15 22 H 0.13 3.94 8.06 -2.91 -0.02 3.91 15 23 H 0.14 3.73 8.06 -2.91 -0.02 3.71 15 24 H 0.10 2.38 8.05 -2.39 -0.02 2.36 15 25 H 0.05 1.92 7.31 -2.38 -0.02 1.90 15 26 H 0.05 1.92 7.07 -2.39 -0.02 1.91 15 27 H 0.11 2.79 8.14 -2.39 -0.02 2.77 15 28 H 0.15 2.14 8.06 -2.91 -0.02 2.11 15 Total: -1.00 -62.05 261.44 5.53 -56.53 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.16 Total: 7.49 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 2.18 Total: -40.65 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.24 Total: -42.10 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.03 Total: -18.65 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -0.07 Total: -5.29 kcal Total: -62.05 5.53 -56.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396102905.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.375 kcal (2) G-P(sol) polarization free energy of solvation -62.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds