Wall clock time and date at job start Mon Mar 30 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48509 * 109.46703 * 274.95930 * 3 2 1 5 5 H 1.48496 * 109.47476 * 34.96071 * 3 2 1 6 6 H 1.48495 * 109.47221 * 154.96425 * 3 2 1 7 7 C 1.39939 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00408 * 163.60746 * 7 2 1 9 9 C 1.41405 * 119.99645 * 343.60282 * 7 2 1 10 10 C 1.40711 * 120.24040 * 334.11281 * 9 7 2 11 11 C 1.37707 * 119.73255 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 119.89104 * 180.02562 * 11 10 9 13 13 C 1.38781 * 120.22562 * 359.97438 * 11 10 9 14 14 C 1.38598 * 120.48350 * 0.02562 * 13 11 10 15 15 C 1.37648 * 120.26095 * 0.23047 * 14 13 11 16 16 C 1.50695 * 120.11220 * 179.72058 * 15 14 13 17 17 C 1.52999 * 109.47284 * 264.99926 * 16 15 14 18 18 C 1.50703 * 109.46868 * 179.97438 * 17 16 15 19 19 O 1.20762 * 119.99222 * 125.00471 * 18 17 16 20 20 H 0.97003 * 119.99926 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.13012 * 0.03514 * 10 9 7 22 22 H 1.07996 * 119.76109 * 179.97438 * 13 11 10 23 23 H 1.07999 * 119.86792 * 179.97438 * 14 13 11 24 24 H 1.09003 * 109.47018 * 25.00411 * 16 15 14 25 25 H 1.09002 * 109.46989 * 144.99572 * 16 15 14 26 26 H 1.08988 * 109.47035 * 300.00225 * 17 16 15 27 27 H 1.09003 * 109.46638 * 60.00425 * 17 16 15 28 28 H 1.07994 * 120.00291 * 305.00459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3849 2.1069 -1.3949 5 1 1.4962 2.6202 0.8022 6 1 3.5883 1.4122 0.5925 7 6 2.0080 -1.2119 0.0005 8 1 3.0550 -1.2311 -0.2634 9 6 1.3441 -2.4114 0.3468 10 6 0.2132 -2.3794 1.1835 11 6 -0.4250 -3.5539 1.5145 12 17 -1.8209 -3.5190 2.5460 13 6 0.0433 -4.7653 1.0254 14 6 1.1563 -4.8075 0.2005 15 6 1.8127 -3.6461 -0.1387 16 6 3.0263 -3.6965 -1.0307 17 6 4.2909 -3.7276 -0.1701 18 6 5.5044 -3.7787 -1.0622 19 8 6.3740 -2.9487 -0.9465 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1527 -1.4374 1.5645 22 1 -0.4627 -5.6819 1.2900 23 1 1.5125 -5.7557 -0.1741 24 1 2.9855 -4.5931 -1.6493 25 1 3.0438 -2.8142 -1.6705 26 1 4.3315 -2.8312 0.4484 27 1 4.2733 -4.6100 0.4697 28 1 5.5964 -4.5574 -1.8047 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396104788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:35 Heat of formation + Delta-G solvation = -46.453818 kcal Electronic energy + Delta-G solvation = -14229.655054 eV Core-core repulsion = 11656.481110 eV Total energy + Delta-G solvation = -2573.173944 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.84983 -37.93792 -35.53608 -33.80317 -33.17667 -29.78921 -28.88430 -25.68568 -23.98312 -21.29362 -20.81748 -19.64826 -17.44246 -16.02887 -15.66567 -15.02145 -14.60524 -14.42832 -13.93620 -13.57494 -12.80869 -12.54194 -12.32312 -12.28914 -11.57450 -11.52615 -11.20256 -11.02412 -10.76665 -10.56236 -10.15765 -10.10608 -9.84354 -9.56381 -9.27921 -9.19036 -7.60360 -7.36231 -6.89267 -4.53697 2.24015 2.56194 2.74206 3.02959 3.05938 3.12229 3.29901 3.84818 4.43102 4.64217 5.30809 5.47324 5.68221 5.90206 6.00428 6.19738 6.30088 6.35498 6.61536 6.73933 6.93300 6.95198 7.15557 7.26384 7.60338 7.66281 7.73243 7.82092 8.03733 8.36881 8.70757 8.72037 10.03529 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.010588 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.616632 B = 2643.791821 C = 4212.825843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.453 4.453 8 H 0.086 0.914 9 C 0.125 3.875 10 C -0.154 4.154 11 C -0.004 4.004 12 Cl -0.127 7.127 13 C -0.239 4.239 14 C -0.075 4.075 15 C -0.197 4.197 16 C -0.043 4.043 17 C -0.185 4.185 18 C 0.347 3.653 19 O -0.475 6.475 20 H 0.284 0.716 21 H 0.129 0.871 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -4.732 -0.658 5.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.104 0.896 9 C 0.122 3.878 10 C -0.174 4.174 11 C -0.031 4.031 12 Cl -0.098 7.098 13 C -0.259 4.259 14 C -0.093 4.093 15 C -0.199 4.199 16 C -0.081 4.081 17 C -0.223 4.223 18 C 0.204 3.796 19 O -0.347 6.347 20 H 0.095 0.905 21 H 0.146 0.854 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.711 -4.103 -0.516 4.945 hybrid contribution -0.115 0.656 0.119 0.677 sum 2.595 -3.447 -0.398 4.333 Atomic orbital electron populations 1.69803 1.07613 1.29673 1.33819 1.25959 0.94749 1.01556 0.92088 0.86327 0.80917 0.80589 0.79274 1.19406 1.19891 1.18146 1.19620 0.97843 0.90656 1.40030 0.89646 1.17320 0.90323 0.91875 0.88320 1.21265 0.99116 0.95757 1.01293 1.20736 0.89593 0.95848 0.96883 1.98256 1.44198 1.99049 1.68343 1.20188 1.02191 0.94949 1.08547 1.20313 0.95099 0.96340 0.97556 1.19580 1.00840 0.93490 1.05994 1.19968 0.90558 1.01413 0.96142 1.22534 0.94750 1.05018 0.99995 1.26201 0.85187 0.84482 0.83763 1.90370 1.40806 1.38130 1.65409 0.90522 0.85352 0.88432 0.88420 0.92678 0.91024 0.89063 0.89123 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.42 10.97 55.55 0.61 -18.82 15 2 C 0.08 1.81 5.16 -17.34 -0.09 1.72 15 3 Si 0.90 18.17 29.59 -169.99 -5.03 13.14 15 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 15 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 7 C -0.45 -11.03 8.12 -37.74 -0.31 -11.34 15 8 H 0.09 2.01 6.10 -52.49 -0.32 1.69 15 9 C 0.12 3.03 5.56 -106.83 -0.59 2.44 15 10 C -0.15 -3.82 8.46 -38.84 -0.33 -4.15 15 11 C 0.00 -0.10 6.31 -39.57 -0.25 -0.35 15 12 Cl -0.13 -2.57 28.95 -51.86 -1.50 -4.07 15 13 C -0.24 -5.05 9.83 -39.25 -0.39 -5.44 15 14 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 15 15 C -0.20 -4.19 5.19 -103.91 -0.54 -4.73 15 16 C -0.04 -0.75 4.67 -27.89 -0.13 -0.88 15 17 C -0.19 -2.88 5.67 -27.88 -0.16 -3.04 15 18 C 0.35 4.85 11.19 36.01 0.40 5.25 15 19 O -0.48 -8.59 17.90 6.00 0.11 -8.48 15 20 H 0.28 6.44 8.30 -40.82 -0.34 6.10 15 21 H 0.13 3.35 6.21 -52.49 -0.33 3.03 15 22 H 0.10 1.88 8.06 -52.49 -0.42 1.46 15 23 H 0.10 1.65 8.06 -52.49 -0.42 1.22 15 24 H 0.05 0.79 8.05 -51.93 -0.42 0.38 15 25 H 0.07 1.33 7.04 -51.93 -0.37 0.97 15 26 H 0.09 1.67 7.31 -51.94 -0.38 1.29 15 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 28 H 0.09 0.84 8.06 -52.49 -0.42 0.42 15 LS Contribution 263.87 15.07 3.98 3.98 Total: -1.00 -26.81 263.87 -7.24 -34.05 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -2.63 Total: 2.61 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.76 Total: -22.40 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.61 Total: -18.82 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.11 Total: -8.48 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.81 -7.24 -34.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396104788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.407 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds