Wall clock time and date at job start Mon Mar 30 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48509 * 109.46703 * 274.95930 * 3 2 1 5 5 H 1.48496 * 109.47476 * 34.96071 * 3 2 1 6 6 H 1.48495 * 109.47221 * 154.96425 * 3 2 1 7 7 C 1.39939 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00408 * 163.60746 * 7 2 1 9 9 C 1.41405 * 119.99645 * 343.60282 * 7 2 1 10 10 C 1.40711 * 120.24040 * 334.11281 * 9 7 2 11 11 C 1.37707 * 119.73255 * 180.02562 * 10 9 7 12 12 Cl 1.73601 * 119.89104 * 180.02562 * 11 10 9 13 13 C 1.38781 * 120.22562 * 359.97438 * 11 10 9 14 14 C 1.38598 * 120.48350 * 0.02562 * 13 11 10 15 15 C 1.37648 * 120.26095 * 0.23047 * 14 13 11 16 16 C 1.50695 * 120.11220 * 179.72058 * 15 14 13 17 17 C 1.52999 * 109.47284 * 264.99926 * 16 15 14 18 18 C 1.50703 * 109.46868 * 179.97438 * 17 16 15 19 19 O 1.20762 * 119.99222 * 125.00471 * 18 17 16 20 20 H 0.97003 * 119.99926 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.13012 * 0.03514 * 10 9 7 22 22 H 1.07996 * 119.76109 * 179.97438 * 13 11 10 23 23 H 1.07999 * 119.86792 * 179.97438 * 14 13 11 24 24 H 1.09003 * 109.47018 * 25.00411 * 16 15 14 25 25 H 1.09002 * 109.46989 * 144.99572 * 16 15 14 26 26 H 1.08988 * 109.47035 * 300.00225 * 17 16 15 27 27 H 1.09003 * 109.46638 * 60.00425 * 17 16 15 28 28 H 1.07994 * 120.00291 * 305.00459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3849 2.1069 -1.3949 5 1 1.4962 2.6202 0.8022 6 1 3.5883 1.4122 0.5925 7 6 2.0080 -1.2119 0.0005 8 1 3.0550 -1.2311 -0.2634 9 6 1.3441 -2.4114 0.3468 10 6 0.2132 -2.3794 1.1835 11 6 -0.4250 -3.5539 1.5145 12 17 -1.8209 -3.5190 2.5460 13 6 0.0433 -4.7653 1.0254 14 6 1.1563 -4.8075 0.2005 15 6 1.8127 -3.6461 -0.1387 16 6 3.0263 -3.6965 -1.0307 17 6 4.2909 -3.7276 -0.1701 18 6 5.5044 -3.7787 -1.0622 19 8 6.3740 -2.9487 -0.9465 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1527 -1.4374 1.5645 22 1 -0.4627 -5.6819 1.2900 23 1 1.5125 -5.7557 -0.1741 24 1 2.9855 -4.5931 -1.6493 25 1 3.0438 -2.8142 -1.6705 26 1 4.3315 -2.8312 0.4484 27 1 4.2733 -4.6100 0.4697 28 1 5.5964 -4.5574 -1.8047 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396104788.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:34 Heat of formation + Delta-G solvation = -60.042659 kcal Electronic energy + Delta-G solvation = -14230.244310 eV Core-core repulsion = 11656.481110 eV Total energy + Delta-G solvation = -2573.763200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.17213 -39.52938 -37.20690 -35.54473 -34.64705 -31.52816 -30.44071 -27.41352 -25.44089 -23.02912 -22.04667 -21.23347 -19.20597 -17.47876 -17.13108 -16.53423 -16.11349 -15.96875 -15.36631 -15.11290 -14.49690 -14.02407 -13.93516 -13.87140 -13.26601 -12.93367 -12.88210 -12.69991 -12.33547 -12.09905 -11.76943 -11.62284 -11.46896 -11.21919 -11.02853 -10.44829 -9.36218 -9.06093 -8.64912 -6.36216 0.80754 1.00249 1.19767 1.36550 1.44731 1.50487 1.58224 2.17271 2.68221 3.54952 3.65734 4.19896 4.43816 4.45950 4.62546 4.66070 4.91698 4.93376 5.08247 5.18526 5.25820 5.43084 5.48977 5.57120 5.87546 5.98479 6.11410 6.30082 6.57430 6.59495 6.91774 6.96600 8.29522 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.010588 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.616632 B = 2643.791821 C = 4212.825843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.478 4.478 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.185 4.185 11 C -0.019 4.019 12 Cl -0.112 7.112 13 C -0.236 4.236 14 C -0.073 4.073 15 C -0.196 4.196 16 C -0.040 4.040 17 C -0.182 4.182 18 C 0.362 3.638 19 O -0.521 6.521 20 H 0.287 0.713 21 H 0.103 0.897 22 H 0.121 0.879 23 H 0.143 0.857 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -6.820 -1.534 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.507 4.507 8 H 0.101 0.899 9 C 0.091 3.909 10 C -0.205 4.205 11 C -0.045 4.045 12 Cl -0.083 7.083 13 C -0.256 4.256 14 C -0.092 4.092 15 C -0.197 4.197 16 C -0.077 4.077 17 C -0.220 4.220 18 C 0.222 3.778 19 O -0.396 6.396 20 H 0.098 0.902 21 H 0.121 0.879 22 H 0.139 0.861 23 H 0.161 0.839 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.556 -6.209 -1.393 7.289 hybrid contribution -0.450 1.122 0.426 1.282 sum 3.105 -5.087 -0.967 6.038 Atomic orbital electron populations 1.69868 1.08794 1.30435 1.35527 1.26649 0.95330 1.04249 0.91576 0.85413 0.79270 0.77120 0.79401 1.18705 1.19314 1.18683 1.19773 0.97866 0.91621 1.41488 0.89888 1.17701 0.90819 0.93452 0.88944 1.21167 1.00652 0.95627 1.03068 1.20937 0.90184 0.96018 0.97401 1.98248 1.43236 1.99051 1.67800 1.20611 1.02307 0.94992 1.07655 1.20785 0.94144 0.97711 0.96517 1.20076 1.01684 0.92748 1.05242 1.19977 0.89502 1.02509 0.95746 1.22476 0.95162 1.04231 1.00098 1.26674 0.83216 0.84542 0.83361 1.90379 1.42262 1.40329 1.66604 0.90233 0.87879 0.86086 0.83943 0.88455 0.93011 0.92929 0.86889 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.31 10.97 21.83 0.24 -42.07 15 2 C 0.04 1.85 5.16 85.25 0.44 2.29 15 3 Si 0.97 38.43 29.59 68.60 2.03 40.46 15 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.48 -24.11 8.12 23.46 0.19 -23.92 15 8 H 0.08 4.06 6.10 -2.91 -0.02 4.04 15 9 C 0.09 4.63 5.56 -21.29 -0.12 4.52 15 10 C -0.18 -9.42 8.46 22.75 0.19 -9.23 15 11 C -0.02 -0.87 6.31 22.27 0.14 -0.73 15 12 Cl -0.11 -4.49 28.95 -2.72 -0.08 -4.57 15 13 C -0.24 -9.42 9.83 22.49 0.22 -9.19 15 14 C -0.07 -2.70 9.66 22.22 0.21 -2.48 15 15 C -0.20 -8.01 5.19 -19.40 -0.10 -8.11 15 16 C -0.04 -1.28 4.67 29.85 0.14 -1.14 15 17 C -0.18 -5.25 5.67 29.85 0.17 -5.09 15 18 C 0.36 8.99 11.19 71.24 0.80 9.78 15 19 O -0.52 -18.11 17.90 -1.46 -0.03 -18.13 15 20 H 0.29 13.57 8.30 -92.71 -0.77 12.80 15 21 H 0.10 5.68 6.21 -2.91 -0.02 5.66 15 22 H 0.12 4.22 8.06 -2.91 -0.02 4.20 15 23 H 0.14 3.95 8.06 -2.91 -0.02 3.93 15 24 H 0.10 2.30 8.05 -2.39 -0.02 2.28 15 25 H 0.05 1.87 7.04 -2.39 -0.02 1.85 15 26 H 0.05 1.93 7.31 -2.39 -0.02 1.91 15 27 H 0.11 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.15 2.02 8.06 -2.91 -0.02 2.00 15 Total: -1.00 -60.58 263.87 5.62 -54.95 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.17 Total: 12.66 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 2.29 Total: -43.30 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.24 Total: -42.07 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.03 Total: -18.13 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 17 Polarization: -4.49 SS G_CDS: -0.08 Total: -4.57 kcal Total: -60.58 5.62 -54.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396104788.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.090 kcal (2) G-P(sol) polarization free energy of solvation -60.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds