Wall clock time and date at job start Mon Mar 30 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00195 * 2 1 4 4 H 1.48501 * 109.47269 * 240.00222 * 3 2 1 5 5 H 1.48504 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47237 * 119.99713 * 3 2 1 7 7 C 1.37876 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00488 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99591 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47002 * 179.97438 * 9 7 2 11 11 C 1.38424 * 119.91184 * 270.27789 * 10 9 7 12 12 C 1.38386 * 120.34292 * 180.23654 * 11 10 9 13 13 C 1.37903 * 120.17339 * 359.48694 * 12 11 10 14 14 C 1.50698 * 120.08824 * 180.27902 * 13 12 11 15 15 Cl 1.80309 * 109.47052 * 262.98032 * 14 13 12 16 16 C 1.39832 * 119.82731 * 0.25445 * 13 12 11 17 17 C 1.47166 * 120.17438 * 180.02562 * 16 13 12 18 18 O 1.21248 * 119.99805 * 354.42602 * 17 16 13 19 19 C 1.37862 * 119.91181 * 90.00041 * 10 9 7 20 20 H 0.96999 * 119.99731 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46751 * 59.99958 * 9 7 2 22 22 H 1.08993 * 109.46999 * 299.99566 * 9 7 2 23 23 H 1.07995 * 119.82975 * 359.97438 * 11 10 9 24 24 H 1.08001 * 119.91074 * 179.76207 * 12 11 10 25 25 H 1.09001 * 109.47147 * 22.97857 * 14 13 12 26 26 H 1.08995 * 109.47669 * 142.98251 * 14 13 12 27 27 H 1.08001 * 119.99660 * 174.41920 * 17 16 13 28 28 H 1.08007 * 120.08662 * 0.04526 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.6834 -4.1655 -1.1993 12 6 3.5790 -5.2205 -1.2097 13 6 4.0352 -5.7541 -0.0228 14 6 5.0152 -6.8988 -0.0364 15 17 4.1256 -8.4541 0.1651 16 6 3.5864 -5.2300 1.1934 17 6 4.0688 -5.7933 2.4646 18 8 4.7770 -6.7774 2.4615 19 6 2.6772 -4.1672 1.1955 20 1 -0.4850 0.8401 0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.3329 -3.7492 -2.1321 24 1 3.9249 -5.6240 -2.1499 25 1 5.5510 -6.9071 -0.9856 26 1 5.7261 -6.7784 0.7810 27 1 3.7919 -5.3300 3.4000 28 1 2.3256 -3.7572 2.1309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396104884.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:31 Heat of formation + Delta-G solvation = -47.541714 kcal Electronic energy + Delta-G solvation = -14012.614352 eV Core-core repulsion = 11439.393233 eV Total energy + Delta-G solvation = -2573.221119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.01025 -39.14695 -36.87529 -35.55078 -33.71609 -32.34241 -30.33201 -27.36517 -25.33393 -24.42075 -22.96324 -20.88083 -18.49943 -17.70033 -16.98490 -16.59995 -16.30564 -15.86736 -15.54265 -14.86071 -14.57685 -14.48298 -14.21565 -14.19490 -13.35248 -13.22118 -12.90554 -12.65379 -12.47579 -12.28869 -11.64305 -11.53556 -11.35454 -11.25435 -10.59614 -10.40928 -9.85769 -9.47291 -8.19623 -6.32432 -0.31108 0.34330 1.42540 1.43926 1.51893 1.57763 1.65076 2.41196 2.97856 3.12429 3.38171 3.61274 3.79920 4.16080 4.26572 4.37792 4.52279 4.58155 4.68440 4.93269 5.03691 5.27907 5.36616 5.38516 5.48322 5.74848 5.94978 5.98049 6.18461 6.49758 6.80525 7.36654 8.89518 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.044664 B = 0.005481 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.758949 B = 5107.195684 C = 5292.772063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.055 3.945 10 C -0.069 4.069 11 C -0.098 4.098 12 C -0.110 4.110 13 C -0.080 4.080 14 C 0.018 3.982 15 Cl -0.190 7.190 16 C -0.180 4.180 17 C 0.386 3.614 18 O -0.475 6.475 19 C -0.074 4.074 20 H 0.265 0.735 21 H 0.006 0.994 22 H 0.011 0.989 23 H 0.125 0.875 24 H 0.151 0.849 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -10.448 0.896 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.069 4.069 11 C -0.117 4.117 12 C -0.128 4.128 13 C -0.081 4.081 14 C -0.043 4.043 15 Cl -0.164 7.164 16 C -0.182 4.182 17 C 0.247 3.753 18 O -0.350 6.350 19 C -0.092 4.092 20 H 0.074 0.926 21 H 0.024 0.976 22 H 0.029 0.971 23 H 0.143 0.857 24 H 0.169 0.831 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.158 0.842 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.110 -10.990 0.915 14.304 hybrid contribution -0.313 1.219 -0.199 1.274 sum 8.797 -9.772 0.716 13.167 Atomic orbital electron populations 1.70061 1.07629 1.28002 1.51158 1.25869 0.95672 1.02950 0.94641 0.85552 0.78306 0.78367 0.79158 1.19442 1.20949 1.19142 1.21348 0.93178 0.91066 1.51086 0.92427 1.18131 0.92830 0.90762 0.96444 1.20454 0.97242 0.95446 0.93767 1.21414 0.96590 0.95583 0.98077 1.21200 0.97109 0.96199 0.98325 1.20087 0.98427 0.96558 0.93029 1.23321 0.93809 0.80814 1.06405 1.98704 1.80488 1.38594 1.98608 1.20927 1.01445 0.99414 0.96364 1.24474 0.75604 0.82185 0.93078 1.90462 1.30165 1.23973 1.90450 1.21371 0.95229 0.93982 0.98600 0.92595 0.97598 0.97115 0.85728 0.83097 0.86628 0.86652 0.84156 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.70 13.29 21.45 0.28 -53.41 15 2 C 0.01 0.39 5.46 84.65 0.46 0.86 15 3 Si 0.96 42.24 29.54 68.60 2.03 44.26 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.53 -28.23 9.09 25.60 0.23 -28.00 15 8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 15 9 C 0.06 2.73 5.10 29.11 0.15 2.88 15 10 C -0.07 -2.72 5.06 -19.91 -0.10 -2.82 15 11 C -0.10 -3.41 9.69 22.35 0.22 -3.19 15 12 C -0.11 -3.11 9.66 22.23 0.21 -2.89 15 13 C -0.08 -2.24 5.30 -19.56 -0.10 -2.34 15 14 C 0.02 0.43 5.88 71.24 0.42 0.85 15 15 Cl -0.19 -5.11 28.11 -2.72 -0.08 -5.19 15 16 C -0.18 -5.20 5.87 -20.15 -0.12 -5.32 15 17 C 0.39 9.29 11.40 70.17 0.80 10.09 15 18 O -0.48 -13.21 13.27 -2.93 -0.04 -13.25 15 19 C -0.07 -2.47 9.44 22.58 0.21 -2.25 15 20 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 21 H 0.01 0.30 8.09 -2.39 -0.02 0.28 15 22 H 0.01 0.55 8.08 -2.39 -0.02 0.53 15 23 H 0.12 4.23 8.06 -2.91 -0.02 4.21 15 24 H 0.15 3.28 8.05 -2.91 -0.02 3.25 15 25 H 0.12 2.11 8.04 -2.39 -0.02 2.09 15 26 H 0.12 2.80 5.87 -2.39 -0.01 2.79 15 27 H 0.14 2.33 8.06 -2.91 -0.02 2.31 15 28 H 0.14 4.28 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -61.93 265.84 5.74 -56.19 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.16 Total: 3.55 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 2.38 Total: -32.15 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.28 Total: -53.41 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.04 Total: -13.25 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -5.11 SS G_CDS: -0.08 Total: -5.19 kcal Total: -61.93 5.74 -56.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396104884.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.647 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds