Wall clock time and date at job start Mon Mar 30 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86793 * 120.00497 * 2 1 4 4 H 1.48496 * 109.47231 * 270.00431 * 3 2 1 5 5 H 1.48504 * 109.47032 * 29.99998 * 3 2 1 6 6 H 1.48499 * 109.47464 * 149.99966 * 3 2 1 7 7 C 1.39937 * 119.99405 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99571 * 162.85208 * 7 2 1 9 9 C 1.41348 * 120.00227 * 342.85389 * 7 2 1 10 10 C 1.40741 * 120.22888 * 154.69905 * 9 7 2 11 11 C 1.36554 * 119.88598 * 179.97438 * 10 9 7 12 12 C 1.38801 * 120.35950 * 359.97438 * 11 10 9 13 13 Cl 1.73600 * 119.76321 * 179.97438 * 12 11 10 14 14 C 1.38792 * 120.47117 * 0.02562 * 12 11 10 15 15 C 1.50693 * 119.95067 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47179 * 279.99486 * 15 14 12 17 17 C 1.50695 * 109.47635 * 179.97438 * 16 15 14 18 18 O 1.20761 * 119.99877 * 124.99607 * 17 16 15 19 19 C 1.37620 * 120.10508 * 0.24204 * 14 12 11 20 20 H 0.96998 * 119.99636 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.06319 * 359.95254 * 10 9 7 22 22 H 1.08001 * 119.82002 * 179.97438 * 11 10 9 23 23 H 1.08998 * 109.47304 * 39.99068 * 15 14 12 24 24 H 1.09003 * 109.47694 * 159.99598 * 15 14 12 25 25 H 1.09001 * 109.46833 * 300.00481 * 16 15 14 26 26 H 1.09003 * 109.46716 * 59.99513 * 16 15 14 27 27 H 1.08002 * 119.99902 * 305.00805 * 17 16 15 28 28 H 1.07998 * 120.18069 * 179.72407 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0463 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5401 1.4400 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0520 -1.2327 -0.2763 9 6 1.3483 -2.4090 0.3598 10 6 1.8158 -3.6473 -0.1185 11 6 1.1734 -4.7995 0.2344 12 6 0.0611 -4.7568 1.0636 13 17 -0.7441 -6.2310 1.5020 14 6 -0.4126 -3.5438 1.5438 15 6 -1.6216 -3.5110 2.4428 16 6 -2.8904 -3.6280 1.5957 17 6 -4.0994 -3.5959 2.4947 18 8 -4.9719 -2.7830 2.3043 19 6 0.2167 -2.3704 1.1958 20 1 -0.4849 0.8401 0.0004 21 1 2.6809 -3.6863 -0.7639 22 1 1.5328 -5.7491 -0.1336 23 1 -1.5753 -4.3438 3.1445 24 1 -1.6387 -2.5712 2.9948 25 1 -2.9367 -2.7953 0.8939 26 1 -2.8733 -4.5678 1.0438 27 1 -4.1854 -4.2997 3.3093 28 1 -0.1536 -1.4255 1.5652 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396105329.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:11 Heat of formation + Delta-G solvation = -59.373478 kcal Electronic energy + Delta-G solvation = -14161.362907 eV Core-core repulsion = 11587.628725 eV Total energy + Delta-G solvation = -2573.734182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23630 -39.59629 -37.02188 -35.74289 -34.79866 -31.34912 -30.77201 -27.14339 -25.78522 -23.00048 -22.18441 -21.45303 -19.05553 -17.40694 -17.27116 -16.77161 -16.20773 -16.03631 -15.51380 -15.18023 -14.50610 -14.04745 -13.99938 -13.57319 -13.41604 -12.98280 -12.87099 -12.77262 -12.36653 -12.17011 -11.89066 -11.66582 -11.51157 -11.23316 -10.97996 -10.55159 -9.33798 -9.19400 -8.68508 -6.38792 0.78017 0.98108 1.12277 1.38724 1.46518 1.53573 1.74123 2.18710 2.63950 3.44923 3.61399 4.03459 4.17846 4.28243 4.42254 4.60630 4.78172 4.87904 4.96828 5.07240 5.23500 5.29234 5.35382 5.61360 5.72184 5.94970 6.04040 6.27086 6.46304 6.58643 6.87483 6.91621 8.26673 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.008355 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.842535 B = 3350.519064 C = 4506.460171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.082 3.918 10 C -0.233 4.233 11 C -0.080 4.080 12 C -0.149 4.149 13 Cl -0.095 7.095 14 C -0.059 4.059 15 C -0.058 4.058 16 C -0.179 4.179 17 C 0.365 3.635 18 O -0.514 6.514 19 C -0.177 4.177 20 H 0.289 0.711 21 H 0.106 0.894 22 H 0.123 0.877 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.147 0.853 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 -5.639 4.320 7.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.080 3.920 10 C -0.252 4.252 11 C -0.098 4.098 12 C -0.176 4.176 13 Cl -0.067 7.067 14 C -0.060 4.060 15 C -0.095 4.095 16 C -0.217 4.217 17 C 0.225 3.775 18 O -0.388 6.388 19 C -0.196 4.196 20 H 0.100 0.900 21 H 0.124 0.876 22 H 0.141 0.859 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.163 0.837 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.625 -5.178 4.238 7.188 hybrid contribution 0.517 0.682 -0.416 0.952 sum -2.108 -4.496 3.822 6.266 Atomic orbital electron populations 1.69863 1.08970 1.30746 1.34717 1.26746 0.95443 1.04505 0.91161 0.85227 0.79212 0.75983 0.79514 1.18761 1.19249 1.18074 1.19876 0.98268 0.92251 1.41613 0.90234 1.18034 0.91834 0.93157 0.89007 1.20887 1.04587 0.92596 1.07158 1.20434 0.94462 0.98002 0.96932 1.20204 1.01020 0.85439 1.10983 1.98212 1.79963 1.35827 1.92670 1.19515 0.96829 0.91383 0.98319 1.20267 0.89839 1.03066 0.96375 1.22395 0.95095 1.04337 0.99848 1.26551 0.83023 0.82100 0.85820 1.90382 1.41589 1.37141 1.69691 1.21142 1.00030 0.96191 1.02271 0.90030 0.87556 0.85887 0.88347 0.91777 0.92636 0.87597 0.83725 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.53 10.96 21.83 0.24 -41.29 15 2 C 0.04 1.82 5.15 85.25 0.44 2.26 15 3 Si 0.98 36.96 29.59 68.60 2.03 38.99 15 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 5 H -0.27 -9.71 7.11 99.48 0.71 -9.01 15 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 7 C -0.49 -25.38 9.05 23.45 0.21 -25.17 15 8 H 0.08 3.95 7.90 -2.91 -0.02 3.92 15 9 C 0.08 4.23 5.57 -21.29 -0.12 4.11 15 10 C -0.23 -10.82 9.74 22.49 0.22 -10.60 15 11 C -0.08 -3.30 9.75 22.01 0.21 -3.08 15 12 C -0.15 -5.95 6.33 22.54 0.14 -5.80 15 13 Cl -0.10 -2.99 26.58 -2.72 -0.07 -3.06 15 14 C -0.06 -2.49 5.13 -19.88 -0.10 -2.59 15 15 C -0.06 -1.90 4.77 29.85 0.14 -1.76 15 16 C -0.18 -5.49 5.72 29.85 0.17 -5.32 15 17 C 0.37 9.40 11.19 71.23 0.80 10.19 15 18 O -0.51 -17.82 17.90 -1.45 -0.03 -17.84 15 19 C -0.18 -8.72 8.31 22.74 0.19 -8.53 15 20 H 0.29 13.40 8.30 -92.71 -0.77 12.64 15 21 H 0.11 4.64 8.06 -2.91 -0.02 4.62 15 22 H 0.12 4.40 8.06 -2.91 -0.02 4.37 15 23 H 0.10 2.67 7.34 -2.39 -0.02 2.65 15 24 H 0.06 2.12 8.00 -2.39 -0.02 2.10 15 25 H 0.05 2.08 8.12 -2.39 -0.02 2.06 15 26 H 0.11 3.08 7.25 -2.39 -0.02 3.07 15 27 H 0.15 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.11 5.63 6.16 -2.91 -0.02 5.61 15 Total: -1.00 -58.56 264.32 5.64 -52.91 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.17 Total: 16.58 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 2.31 Total: -46.29 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.24 Total: -41.29 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.03 Total: -17.84 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -0.07 Total: -3.06 kcal Total: -58.56 5.64 -52.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396105329.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.459 kcal (2) G-P(sol) polarization free energy of solvation -58.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds