Wall clock time and date at job start Mon Mar 30 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48504 * 109.47199 * 269.99845 * 3 2 1 5 5 H 1.48502 * 109.47335 * 30.00411 * 3 2 1 6 6 H 1.48506 * 109.47135 * 150.00488 * 3 2 1 7 7 C 1.39950 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99896 * 197.42042 * 7 2 1 9 9 C 1.41335 * 119.99691 * 17.42311 * 7 2 1 10 10 C 1.40722 * 120.25716 * 24.95914 * 9 7 2 11 11 C 1.36576 * 119.88094 * 179.97438 * 10 9 7 12 12 C 1.38679 * 120.41935 * 359.97322 * 11 10 9 13 13 C 1.38554 * 120.52141 * 0.04705 * 12 11 10 14 14 C 1.50701 * 119.94804 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47357 * 264.95824 * 14 13 12 16 16 C 1.50701 * 109.46980 * 179.97438 * 15 14 13 17 17 O 1.20765 * 120.00031 * 125.00423 * 16 15 14 18 18 C 1.37862 * 120.10557 * 359.95707 * 13 12 11 19 19 Cl 1.73597 * 120.20613 * 180.29489 * 18 13 12 20 20 H 0.97002 * 119.99782 * 359.97438 * 1 2 3 21 21 H 1.07991 * 120.05911 * 359.95036 * 10 9 7 22 22 H 1.08004 * 119.79116 * 180.02562 * 11 10 9 23 23 H 1.08000 * 119.73858 * 180.02562 * 12 11 10 24 24 H 1.08997 * 109.47201 * 24.95856 * 14 13 12 25 25 H 1.08999 * 109.47149 * 144.95851 * 14 13 12 26 26 H 1.08995 * 109.47224 * 299.99685 * 15 14 13 27 27 H 1.08999 * 109.46969 * 59.99917 * 15 14 13 28 28 H 1.07995 * 120.00061 * 304.99592 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4402 0.7000 7 6 2.0082 -1.2120 -0.0005 8 1 3.0509 -1.2335 0.2794 9 6 1.3501 -2.4077 -0.3676 10 6 0.2205 -2.3669 -1.2058 11 6 -0.4092 -3.5271 -1.5561 12 6 0.0577 -4.7474 -1.0913 13 6 1.1682 -4.8074 -0.2648 14 6 1.6642 -6.1404 0.2332 15 6 1.0740 -6.4196 1.6169 16 6 1.5696 -7.7530 2.1146 17 8 2.1252 -7.8297 3.1841 18 6 1.8203 -3.6495 0.1023 19 17 3.2164 -3.7223 1.1315 20 1 -0.4850 0.8401 0.0004 21 1 -0.1481 -1.4198 -1.5711 22 1 -1.2758 -3.4941 -2.1998 23 1 -0.4484 -5.6581 -1.3755 24 1 1.3556 -6.9244 -0.4583 25 1 2.7520 -6.1217 0.2993 26 1 1.3826 -5.6358 2.3085 27 1 -0.0138 -6.4383 1.5509 28 1 1.4277 -8.6399 1.5150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396106039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:26 Heat of formation + Delta-G solvation = -44.284574 kcal Electronic energy + Delta-G solvation = -14161.306139 eV Core-core repulsion = 11588.226261 eV Total energy + Delta-G solvation = -2573.079878 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.95526 -37.93144 -35.01951 -34.45724 -32.90226 -29.81928 -28.93954 -25.42807 -24.33155 -21.02125 -20.90084 -20.09020 -17.11787 -16.15125 -15.62792 -15.06893 -14.85950 -14.54015 -14.02689 -13.64868 -12.76391 -12.67134 -12.33707 -12.20126 -11.67567 -11.40101 -11.18355 -10.95759 -10.69772 -10.55582 -10.30785 -10.07348 -9.77863 -9.50580 -9.27314 -9.16274 -7.51445 -7.39625 -6.89554 -4.49195 2.11472 2.62672 2.71838 3.02570 3.07148 3.12236 3.68419 3.85982 4.44514 4.51655 5.20947 5.38912 5.48597 5.68255 5.86022 6.02701 6.15038 6.33686 6.44144 6.54630 6.87453 7.05556 7.12155 7.31236 7.52499 7.58718 7.80015 7.91260 8.06183 8.44365 8.69071 8.73965 10.04014 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.007489 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.111103 B = 3738.022938 C = 4312.212383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.118 3.882 10 C -0.155 4.155 11 C -0.101 4.101 12 C -0.232 4.232 13 C -0.051 4.051 14 C -0.066 4.066 15 C -0.183 4.183 16 C 0.348 3.652 17 O -0.471 6.471 18 C -0.136 4.136 19 Cl -0.116 7.116 20 H 0.283 0.717 21 H 0.123 0.877 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -6.097 -1.516 6.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.106 0.894 9 C 0.115 3.885 10 C -0.175 4.175 11 C -0.120 4.120 12 C -0.252 4.252 13 C -0.052 4.052 14 C -0.103 4.103 15 C -0.221 4.221 16 C 0.204 3.796 17 O -0.343 6.343 18 C -0.164 4.164 19 Cl -0.087 7.087 20 H 0.094 0.906 21 H 0.141 0.859 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.233 -5.970 -0.815 6.030 hybrid contribution 0.219 0.882 -0.046 0.910 sum 0.451 -5.088 -0.861 5.180 Atomic orbital electron populations 1.69820 1.07677 1.29595 1.34020 1.25959 0.94737 1.01565 0.92011 0.86261 0.80668 0.80185 0.79452 1.19127 1.20198 1.18342 1.19705 0.98535 0.90710 1.38573 0.89395 1.17420 0.91272 0.90748 0.89066 1.21041 0.98573 0.97401 1.00449 1.20473 0.98673 0.93209 0.99600 1.20125 1.00629 0.96593 1.07834 1.18978 0.95974 0.92010 0.98203 1.20298 1.00542 0.95594 0.93876 1.22458 1.02813 0.97393 0.99461 1.26147 0.73205 0.94372 0.85836 1.90379 1.31497 1.89300 1.23137 1.20656 0.95384 0.94758 1.05553 1.98204 1.43690 1.98508 1.68333 0.90608 0.85916 0.88981 0.88674 0.91388 0.91136 0.89112 0.88506 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.47 10.96 55.55 0.61 -18.86 15 2 C 0.08 1.85 5.14 -17.33 -0.09 1.76 15 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 15 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.45 -11.45 8.53 -37.76 -0.32 -11.77 15 8 H 0.09 2.23 7.11 -52.49 -0.37 1.86 15 9 C 0.12 3.01 5.57 -106.79 -0.60 2.42 15 10 C -0.16 -3.80 8.65 -39.24 -0.34 -4.14 15 11 C -0.10 -2.19 9.97 -40.02 -0.40 -2.59 15 12 C -0.23 -4.70 9.68 -39.30 -0.38 -5.08 15 13 C -0.05 -1.04 5.13 -104.64 -0.54 -1.58 15 14 C -0.07 -1.05 4.84 -27.88 -0.13 -1.19 15 15 C -0.18 -2.73 5.77 -27.88 -0.16 -2.89 15 16 C 0.35 4.55 11.19 36.01 0.40 4.96 15 17 O -0.47 -8.09 17.90 6.00 0.11 -7.99 15 18 C -0.14 -3.17 6.37 -38.73 -0.25 -3.42 15 19 Cl -0.12 -2.50 25.82 -51.86 -1.34 -3.84 15 20 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 21 H 0.12 3.09 6.17 -52.49 -0.32 2.77 15 22 H 0.09 1.77 8.06 -52.48 -0.42 1.34 15 23 H 0.10 1.65 8.06 -52.49 -0.42 1.22 15 24 H 0.07 0.90 8.05 -51.93 -0.42 0.48 15 25 H 0.07 1.16 7.12 -51.93 -0.37 0.79 15 26 H 0.09 1.61 7.90 -51.93 -0.41 1.20 15 27 H 0.10 1.33 8.14 -51.93 -0.42 0.90 15 28 H 0.09 0.79 8.06 -52.49 -0.42 0.36 15 LS Contribution 263.41 15.07 3.97 3.97 Total: -1.00 -27.55 263.41 -7.21 -34.76 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.72 Total: 2.25 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.80 Total: -23.52 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.61 Total: -18.86 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -1.34 Total: -3.84 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.55 -7.21 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396106039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.530 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds