Wall clock time and date at job start Mon Mar 30 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48504 * 109.47199 * 269.99845 * 3 2 1 5 5 H 1.48502 * 109.47335 * 30.00411 * 3 2 1 6 6 H 1.48506 * 109.47135 * 150.00488 * 3 2 1 7 7 C 1.39950 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99896 * 197.42042 * 7 2 1 9 9 C 1.41335 * 119.99691 * 17.42311 * 7 2 1 10 10 C 1.40722 * 120.25716 * 24.95914 * 9 7 2 11 11 C 1.36576 * 119.88094 * 179.97438 * 10 9 7 12 12 C 1.38679 * 120.41935 * 359.97322 * 11 10 9 13 13 C 1.38554 * 120.52141 * 0.04705 * 12 11 10 14 14 C 1.50701 * 119.94804 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47357 * 264.95824 * 14 13 12 16 16 C 1.50701 * 109.46980 * 179.97438 * 15 14 13 17 17 O 1.20765 * 120.00031 * 125.00423 * 16 15 14 18 18 C 1.37862 * 120.10557 * 359.95707 * 13 12 11 19 19 Cl 1.73597 * 120.20613 * 180.29489 * 18 13 12 20 20 H 0.97002 * 119.99782 * 359.97438 * 1 2 3 21 21 H 1.07991 * 120.05911 * 359.95036 * 10 9 7 22 22 H 1.08004 * 119.79116 * 180.02562 * 11 10 9 23 23 H 1.08000 * 119.73858 * 180.02562 * 12 11 10 24 24 H 1.08997 * 109.47201 * 24.95856 * 14 13 12 25 25 H 1.08999 * 109.47149 * 144.95851 * 14 13 12 26 26 H 1.08995 * 109.47224 * 299.99685 * 15 14 13 27 27 H 1.08999 * 109.46969 * 59.99917 * 15 14 13 28 28 H 1.07995 * 120.00061 * 304.99592 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4402 0.7000 7 6 2.0082 -1.2120 -0.0005 8 1 3.0509 -1.2335 0.2794 9 6 1.3501 -2.4077 -0.3676 10 6 0.2205 -2.3669 -1.2058 11 6 -0.4092 -3.5271 -1.5561 12 6 0.0577 -4.7474 -1.0913 13 6 1.1682 -4.8074 -0.2648 14 6 1.6642 -6.1404 0.2332 15 6 1.0740 -6.4196 1.6169 16 6 1.5696 -7.7530 2.1146 17 8 2.1252 -7.8297 3.1841 18 6 1.8203 -3.6495 0.1023 19 17 3.2164 -3.7223 1.1315 20 1 -0.4850 0.8401 0.0004 21 1 -0.1481 -1.4198 -1.5711 22 1 -1.2758 -3.4941 -2.1998 23 1 -0.4484 -5.6581 -1.3755 24 1 1.3556 -6.9244 -0.4583 25 1 2.7520 -6.1217 0.2993 26 1 1.3826 -5.6358 2.3085 27 1 -0.0138 -6.4383 1.5509 28 1 1.4277 -8.6399 1.5150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396106039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:25 Heat of formation + Delta-G solvation = -58.700838 kcal Electronic energy + Delta-G solvation = -14161.931276 eV Core-core repulsion = 11588.226261 eV Total energy + Delta-G solvation = -2573.705014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18418 -39.54601 -36.75966 -36.09309 -34.43697 -31.58772 -30.46887 -27.22599 -25.71094 -22.65383 -22.23556 -21.61906 -18.88275 -17.42276 -17.22886 -16.69052 -16.15212 -16.04069 -15.45628 -15.16765 -14.39925 -14.16558 -13.87102 -13.82291 -13.25300 -12.99240 -12.75809 -12.57812 -12.30909 -12.00714 -11.97678 -11.67619 -11.42284 -11.08124 -11.01868 -10.51124 -9.28964 -9.10717 -8.67456 -6.36503 0.89112 0.92743 1.16739 1.36939 1.48967 1.50546 1.93517 2.19168 2.69469 3.48132 3.63912 4.07390 4.23551 4.37333 4.53947 4.71337 4.77665 4.89673 5.00092 5.08369 5.28893 5.33720 5.40490 5.59569 5.89204 6.00746 6.15328 6.30004 6.52607 6.62119 6.86128 6.92719 8.28236 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.007489 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.111103 B = 3738.022938 C = 4312.212383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.484 4.484 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.184 4.184 11 C -0.104 4.104 12 C -0.220 4.220 13 C -0.052 4.052 14 C -0.061 4.061 15 C -0.183 4.183 16 C 0.364 3.636 17 O -0.517 6.517 18 C -0.157 4.157 19 Cl -0.111 7.111 20 H 0.289 0.711 21 H 0.105 0.895 22 H 0.118 0.882 23 H 0.138 0.862 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -8.081 -2.263 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.513 4.513 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.203 4.203 11 C -0.122 4.122 12 C -0.239 4.239 13 C -0.053 4.053 14 C -0.098 4.098 15 C -0.221 4.221 16 C 0.224 3.776 17 O -0.392 6.392 18 C -0.184 4.184 19 Cl -0.083 7.083 20 H 0.100 0.900 21 H 0.123 0.877 22 H 0.136 0.864 23 H 0.156 0.844 24 H 0.129 0.871 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.299 -7.968 -1.575 8.127 hybrid contribution 0.322 1.343 0.146 1.388 sum 0.024 -6.625 -1.429 6.778 Atomic orbital electron populations 1.69858 1.08781 1.30651 1.35062 1.26671 0.95450 1.04252 0.91277 0.85297 0.79107 0.76326 0.79638 1.18402 1.19134 1.18719 1.19818 0.98363 0.92136 1.40988 0.90498 1.17772 0.92212 0.91778 0.89904 1.21017 0.99529 0.97948 1.01840 1.20831 0.99014 0.92982 0.99389 1.20632 0.99855 0.97510 1.05952 1.19511 0.95385 0.93236 0.97190 1.20332 1.00106 0.94189 0.95200 1.22449 1.03817 0.97923 0.97947 1.26623 0.70930 0.94894 0.85146 1.90391 1.33656 1.89685 1.25442 1.20992 0.96105 0.95374 1.05975 1.98190 1.43414 1.98493 1.68185 0.89991 0.87722 0.86443 0.84395 0.87067 0.91872 0.92894 0.86889 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.82 10.96 21.83 0.24 -41.58 15 2 C 0.04 1.96 5.14 85.26 0.44 2.40 15 3 Si 0.98 38.37 29.59 68.60 2.03 40.40 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 5 H -0.27 -9.94 7.11 99.48 0.71 -9.24 15 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 7 C -0.48 -25.84 8.53 23.45 0.20 -25.64 15 8 H 0.08 4.10 7.11 -2.91 -0.02 4.08 15 9 C 0.09 4.52 5.57 -21.27 -0.12 4.40 15 10 C -0.18 -9.17 8.65 22.49 0.19 -8.98 15 11 C -0.10 -4.35 9.97 21.99 0.22 -4.13 15 12 C -0.22 -8.17 9.68 22.45 0.22 -7.95 15 13 C -0.05 -2.03 5.13 -19.88 -0.10 -2.14 15 14 C -0.06 -1.74 4.84 29.85 0.14 -1.60 15 15 C -0.18 -4.95 5.77 29.85 0.17 -4.78 15 16 C 0.36 8.21 11.19 71.24 0.80 9.00 15 17 O -0.52 -16.82 17.90 -1.46 -0.03 -16.85 15 18 C -0.16 -7.36 6.37 22.82 0.15 -7.21 15 19 Cl -0.11 -4.87 25.82 -2.72 -0.07 -4.94 15 20 H 0.29 13.36 8.30 -92.71 -0.77 12.59 15 21 H 0.10 5.50 6.17 -2.92 -0.02 5.48 15 22 H 0.12 4.23 8.06 -2.91 -0.02 4.20 15 23 H 0.14 3.95 8.06 -2.91 -0.02 3.93 15 24 H 0.11 2.26 8.05 -2.39 -0.02 2.24 15 25 H 0.06 1.92 7.12 -2.39 -0.02 1.90 15 26 H 0.05 1.84 7.90 -2.39 -0.02 1.82 15 27 H 0.11 2.68 8.14 -2.39 -0.02 2.66 15 28 H 0.15 1.71 8.06 -2.91 -0.02 1.69 15 Total: -1.00 -62.65 263.41 5.65 -57.00 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.17 Total: 12.58 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 2.31 Total: -46.62 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.24 Total: -41.58 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.03 Total: -16.85 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 17 Polarization: -4.87 SS G_CDS: -0.07 Total: -4.94 kcal Total: -62.65 5.65 -57.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396106039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.697 kcal (2) G-P(sol) polarization free energy of solvation -62.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds