Wall clock time and date at job start Mon Mar 30 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00272 * 2 1 4 4 H 1.48501 * 109.47170 * 269.99751 * 3 2 1 5 5 H 1.48501 * 109.47065 * 29.99593 * 3 2 1 6 6 H 1.48500 * 109.47216 * 149.99554 * 3 2 1 7 7 C 1.37882 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99969 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.46881 * 179.97438 * 9 7 2 11 11 C 1.37906 * 119.91803 * 265.02229 * 10 9 7 12 12 C 1.39833 * 119.82552 * 180.02562 * 11 10 9 13 13 C 1.47162 * 120.17217 * 179.97438 * 12 11 10 14 14 O 1.21257 * 120.00470 * 179.97438 * 13 12 11 15 15 C 1.39875 * 119.65915 * 359.74444 * 12 11 10 16 16 C 1.37866 * 119.82052 * 0.48866 * 15 12 11 17 17 C 1.38384 * 119.90920 * 85.00550 * 10 9 7 18 18 C 1.50692 * 119.82758 * 359.97378 * 17 10 9 19 19 Cl 1.80304 * 109.47115 * 270.02232 * 18 17 10 20 20 H 0.97002 * 119.99279 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46997 * 60.00127 * 9 7 2 22 22 H 1.08996 * 109.47624 * 299.99783 * 9 7 2 23 23 H 1.08003 * 120.08909 * 359.97438 * 11 10 9 24 24 H 1.08006 * 120.00242 * 359.97438 * 13 12 11 25 25 H 1.07998 * 120.08907 * 180.25249 * 15 12 11 26 26 H 1.08002 * 119.91563 * 179.79509 * 16 15 12 27 27 H 1.08998 * 109.47442 * 30.02562 * 18 17 10 28 28 H 1.08998 * 109.47390 * 150.02572 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6150 0.0023 11 6 4.3403 -3.2281 1.1936 12 6 4.8067 -4.5464 1.1923 13 6 5.1579 -5.2079 2.4591 14 8 5.5616 -6.3513 2.4546 15 6 4.9331 -5.2347 -0.0187 16 6 4.6071 -4.6063 -1.2017 17 6 4.1457 -3.3012 -1.1922 18 6 3.7857 -2.6240 -2.4894 19 17 2.0455 -2.9182 -2.8582 20 1 -0.4849 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8753 -0.6806 -0.8888 23 1 4.2369 -2.6913 2.1250 24 1 5.0561 -4.6749 3.3930 25 1 5.2887 -6.2545 -0.0274 26 1 4.7072 -5.1353 -2.1380 27 1 3.9622 -1.5520 -2.4008 28 1 4.4009 -3.0282 -3.2933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396108537.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:46 Heat of formation + Delta-G solvation = -47.107149 kcal Electronic energy + Delta-G solvation = -14242.606846 eV Core-core repulsion = 11669.404571 eV Total energy + Delta-G solvation = -2573.202274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87765 -39.40588 -36.66955 -35.34894 -33.65671 -33.00961 -29.61594 -28.36044 -24.85219 -24.24929 -22.86375 -20.61538 -18.84346 -17.87423 -17.16087 -16.45300 -16.16487 -15.77687 -15.41780 -15.08533 -14.91263 -14.59741 -14.01526 -13.95860 -13.54970 -13.24832 -13.00061 -12.68149 -12.35466 -11.89555 -11.69829 -11.48497 -11.15787 -11.05434 -10.73893 -10.61239 -9.78003 -9.48648 -8.14326 -6.15706 -0.38677 0.53972 1.28449 1.41718 1.44099 1.52709 1.91581 2.44041 2.97249 3.20650 3.38455 3.71201 3.85083 4.06419 4.13403 4.36997 4.46594 4.58965 4.70187 4.86518 5.02902 5.16236 5.19902 5.39757 5.43741 5.66907 5.83356 5.99656 6.41617 6.47456 6.91206 7.45269 9.02154 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.008729 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.393550 B = 3207.043669 C = 3958.127143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.014 3.986 3 Si 0.931 3.069 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.240 1.240 7 C -0.486 4.486 8 H 0.036 0.964 9 C 0.015 3.985 10 C -0.058 4.058 11 C -0.073 4.073 12 C -0.195 4.195 13 C 0.397 3.603 14 O -0.502 6.502 15 C -0.087 4.087 16 C -0.114 4.114 17 C -0.083 4.083 18 C 0.008 3.992 19 Cl -0.188 7.188 20 H 0.261 0.739 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.147 0.853 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.149 0.851 27 H 0.099 0.901 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.372 -4.981 -1.183 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.182 4.182 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.163 1.163 7 C -0.524 4.524 8 H 0.054 0.946 9 C -0.022 4.022 10 C -0.059 4.059 11 C -0.091 4.091 12 C -0.196 4.196 13 C 0.259 3.741 14 O -0.378 6.378 15 C -0.105 4.105 16 C -0.132 4.132 17 C -0.083 4.083 18 C -0.054 4.054 19 Cl -0.161 7.161 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.165 0.835 24 H 0.164 0.836 25 H 0.155 0.845 26 H 0.167 0.833 27 H 0.118 0.882 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.318 -5.495 -1.214 13.542 hybrid contribution -0.553 0.998 -0.174 1.154 sum 11.765 -4.497 -1.388 12.672 Atomic orbital electron populations 1.70062 1.08253 1.27475 1.53277 1.25743 0.95207 1.02459 0.94806 0.85953 0.79960 0.79574 0.78958 1.19657 1.21975 1.16349 1.20914 0.89855 0.92852 1.48817 0.94613 1.18776 0.95044 0.90309 0.98042 1.20066 0.95207 0.97573 0.93014 1.21463 0.95461 0.93621 0.98559 1.21143 1.05735 0.95774 0.96985 1.24585 0.69885 0.86404 0.93253 1.90480 1.35562 1.21077 1.90721 1.21455 0.97425 0.99990 0.91666 1.21171 0.99309 0.93380 0.99382 1.20012 0.98741 0.95113 0.94447 1.23271 0.82266 1.03397 0.96429 1.98749 1.25013 1.97181 1.95179 0.93015 0.94482 0.94832 0.83493 0.83593 0.84482 0.83317 0.88242 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 13.96 21.45 0.30 -57.20 15 2 C 0.01 0.79 5.47 84.66 0.46 1.25 15 3 Si 0.93 41.23 27.47 68.60 1.88 43.12 15 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 15 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 15 7 C -0.49 -25.37 9.04 25.60 0.23 -25.13 15 8 H 0.04 2.14 7.98 -2.91 -0.02 2.12 15 9 C 0.02 0.63 3.66 29.10 0.11 0.74 15 10 C -0.06 -2.08 5.06 -19.91 -0.10 -2.18 15 11 C -0.07 -2.24 9.42 22.58 0.21 -2.02 15 12 C -0.20 -5.41 5.87 -20.15 -0.12 -5.53 15 13 C 0.40 9.37 11.46 70.17 0.80 10.17 15 14 O -0.50 -15.03 17.17 -2.96 -0.05 -15.08 15 15 C -0.09 -2.41 9.60 22.58 0.22 -2.19 15 16 C -0.11 -3.13 9.68 22.23 0.22 -2.92 15 17 C -0.08 -2.65 5.27 -19.79 -0.10 -2.76 15 18 C 0.01 0.25 6.36 71.23 0.45 0.71 15 19 Cl -0.19 -7.20 28.53 -2.72 -0.08 -7.28 15 20 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 21 H 0.04 1.48 7.11 -2.39 -0.02 1.46 15 22 H 0.03 1.34 5.57 -2.39 -0.01 1.32 15 23 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 24 H 0.15 2.19 8.06 -2.91 -0.02 2.16 15 25 H 0.14 3.45 7.65 -2.91 -0.02 3.43 15 26 H 0.15 3.20 8.06 -2.91 -0.02 3.17 15 27 H 0.10 3.13 6.00 -2.39 -0.01 3.12 15 28 H 0.13 2.80 8.08 -2.39 -0.02 2.78 15 Total: -1.00 -66.59 263.64 5.55 -61.04 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.11 Total: 5.27 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 2.38 Total: -29.87 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.30 Total: -57.20 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.05 Total: -15.08 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.88 Total: 43.12 kcal Atomic # 17 Polarization: -7.20 SS G_CDS: -0.08 Total: -7.28 kcal Total: -66.59 5.55 -61.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396108537.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.932 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds