Wall clock time and date at job start Mon Mar 30 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99718 * 2 1 4 4 H 1.48496 * 109.47218 * 239.99430 * 3 2 1 5 5 H 1.48497 * 109.47621 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46824 * 120.00139 * 3 2 1 7 7 C 1.37870 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.38427 * 119.82989 * 90.00338 * 10 9 7 12 12 C 1.37863 * 120.17719 * 179.97438 * 11 10 9 13 13 C 1.39871 * 119.82037 * 359.97438 * 12 11 10 14 14 C 1.47172 * 120.16711 * 179.97438 * 13 12 11 15 15 O 1.21253 * 119.99557 * 174.45538 * 14 13 12 16 16 C 1.39829 * 119.65909 * 0.02562 * 13 12 11 17 17 C 1.50703 * 120.08639 * 180.02562 * 16 13 12 18 18 Cl 1.80299 * 109.47464 * 82.87911 * 17 16 13 19 19 C 1.37908 * 119.82837 * 0.27279 * 16 13 12 20 20 H 0.96999 * 119.99586 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47160 * 59.99810 * 9 7 2 22 22 H 1.09005 * 109.46909 * 300.00116 * 9 7 2 23 23 H 1.08004 * 119.90851 * 359.96948 * 11 10 9 24 24 H 1.08001 * 120.08709 * 179.97438 * 12 11 10 25 25 H 1.07990 * 120.00095 * 354.45525 * 14 13 12 26 26 H 1.08997 * 109.47035 * 322.87826 * 17 16 13 27 27 H 1.09006 * 109.47428 * 202.87885 * 17 16 13 28 28 H 1.07994 * 119.91688 * 179.72515 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6778 -4.1679 1.2003 12 6 3.5733 -5.2161 1.2087 13 6 4.0293 -5.7510 -0.0006 14 6 4.9857 -6.8696 -0.0006 15 8 5.3019 -7.3968 -1.0457 16 6 3.5727 -5.2167 -1.2094 17 6 4.0572 -5.7860 -2.5179 18 17 3.0860 -7.2469 -2.9343 19 6 2.6816 -4.1642 -1.2011 20 1 -0.4849 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8897 23 1 2.3245 -3.7539 2.1332 24 1 3.9218 -5.6230 2.1464 25 1 5.4059 -7.2207 0.9302 26 1 5.1078 -6.0619 -2.4273 27 1 3.9443 -5.0387 -3.3034 28 1 2.3315 -3.7476 -2.1339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396108935.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:29 Heat of formation + Delta-G solvation = -32.962778 kcal Electronic energy + Delta-G solvation = -14036.801885 eV Core-core repulsion = 11464.212957 eV Total energy + Delta-G solvation = -2572.588928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.78699 -37.92119 -35.67321 -33.69760 -32.05943 -31.50777 -27.80815 -26.72512 -24.19654 -22.05356 -21.77289 -19.73931 -16.75893 -16.44256 -15.72223 -15.04381 -14.71095 -14.48471 -14.26470 -13.49074 -13.43881 -13.16960 -12.84224 -12.59468 -11.91308 -11.43527 -11.40560 -11.02430 -10.75353 -10.63064 -10.17792 -10.13189 -9.84380 -9.62689 -9.26855 -8.54434 -8.49572 -8.10715 -6.16198 -4.21604 0.94255 1.60608 2.72193 2.83607 3.24651 3.29685 3.32223 4.21820 4.38651 4.40422 4.80534 4.95257 5.19108 5.29973 5.44613 5.65293 5.70990 5.79584 5.97469 6.28124 6.35726 6.63011 6.85418 6.90862 7.28723 7.42456 7.57480 7.61058 7.78201 8.14437 8.82896 9.43166 10.93608 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.035217 B = 0.005907 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.872747 B = 4738.908657 C = 5005.350766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.042 3.958 10 C 0.005 3.995 11 C -0.133 4.133 12 C -0.069 4.069 13 C -0.210 4.210 14 C 0.380 3.620 15 O -0.462 6.462 16 C -0.050 4.050 17 C 0.011 3.989 18 Cl -0.178 7.178 19 C -0.121 4.121 20 H 0.264 0.736 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -10.221 0.389 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.005 3.995 10 C 0.005 3.995 11 C -0.151 4.151 12 C -0.087 4.087 13 C -0.211 4.211 14 C 0.240 3.760 15 O -0.337 6.337 16 C -0.050 4.050 17 C -0.051 4.051 18 Cl -0.152 7.152 19 C -0.140 4.140 20 H 0.074 0.926 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.113 0.887 26 H 0.134 0.866 27 H 0.110 0.890 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.309 -10.497 -0.210 12.792 hybrid contribution 0.266 1.093 0.177 1.138 sum 7.575 -9.404 -0.033 12.076 Atomic orbital electron populations 1.69941 1.06062 1.27192 1.49750 1.25003 0.94906 0.99329 0.94888 0.86560 0.79527 0.82603 0.78797 1.20089 1.21136 1.20093 1.20940 0.92984 0.89570 1.52061 0.92410 1.18483 0.92587 0.89436 0.98962 1.21024 0.93554 0.93219 0.91692 1.21161 0.98500 0.96630 0.98774 1.21261 0.95758 0.95336 0.96371 1.20454 1.04631 1.02292 0.93742 1.23949 0.78499 0.80667 0.92869 1.90469 1.54471 1.52494 1.36239 1.19906 0.96421 0.95580 0.93117 1.23285 0.98600 0.87868 0.95384 1.98695 1.75804 1.46428 1.94253 1.21024 0.97580 0.96264 0.99086 0.92585 0.94845 0.94803 0.85463 0.85707 0.88720 0.86632 0.89034 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.60 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.52 -13.71 9.09 -34.44 -0.31 -14.02 15 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 15 9 C 0.04 1.01 5.09 -29.04 -0.15 0.87 15 10 C 0.01 0.11 5.08 -104.50 -0.53 -0.42 15 11 C -0.13 -2.28 9.68 -39.65 -0.38 -2.66 15 12 C -0.07 -0.97 9.80 -39.11 -0.38 -1.36 15 13 C -0.21 -3.08 5.87 -105.06 -0.62 -3.70 15 14 C 0.38 4.75 11.40 34.36 0.39 5.14 15 15 O -0.46 -6.92 13.27 5.58 0.07 -6.84 15 16 C -0.05 -0.80 5.30 -104.15 -0.55 -1.36 15 17 C 0.01 0.16 5.88 36.01 0.21 0.37 15 18 Cl -0.18 -2.77 28.10 -51.86 -1.46 -4.22 15 19 C -0.12 -2.22 9.31 -39.65 -0.37 -2.59 15 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.03 0.85 8.08 -51.93 -0.42 0.43 15 22 H 0.03 0.85 8.08 -51.93 -0.42 0.43 15 23 H 0.13 2.08 8.06 -52.48 -0.42 1.66 15 24 H 0.13 1.29 8.06 -52.49 -0.42 0.86 15 25 H 0.10 0.81 8.06 -52.49 -0.42 0.39 15 26 H 0.12 1.66 5.88 -51.93 -0.31 1.35 15 27 H 0.09 1.20 8.03 -51.93 -0.42 0.78 15 28 H 0.13 2.28 8.05 -52.49 -0.42 1.85 15 LS Contribution 265.82 15.07 4.01 4.01 Total: -1.00 -29.11 265.82 -7.25 -36.36 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -2.79 Total: -2.22 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.79 Total: -18.18 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.74 Total: -24.60 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: 0.07 Total: -6.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -1.46 Total: -4.22 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.11 -7.25 -36.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396108935.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.395 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds