Wall clock time and date at job start Mon Mar 30 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99718 * 2 1 4 4 H 1.48496 * 109.47218 * 239.99430 * 3 2 1 5 5 H 1.48497 * 109.47621 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46824 * 120.00139 * 3 2 1 7 7 C 1.37870 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.38427 * 119.82989 * 90.00338 * 10 9 7 12 12 C 1.37863 * 120.17719 * 179.97438 * 11 10 9 13 13 C 1.39871 * 119.82037 * 359.97438 * 12 11 10 14 14 C 1.47172 * 120.16711 * 179.97438 * 13 12 11 15 15 O 1.21253 * 119.99557 * 174.45538 * 14 13 12 16 16 C 1.39829 * 119.65909 * 0.02562 * 13 12 11 17 17 C 1.50703 * 120.08639 * 180.02562 * 16 13 12 18 18 Cl 1.80299 * 109.47464 * 82.87911 * 17 16 13 19 19 C 1.37908 * 119.82837 * 0.27279 * 16 13 12 20 20 H 0.96999 * 119.99586 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47160 * 59.99810 * 9 7 2 22 22 H 1.09005 * 109.46909 * 300.00116 * 9 7 2 23 23 H 1.08004 * 119.90851 * 359.96948 * 11 10 9 24 24 H 1.08001 * 120.08709 * 179.97438 * 12 11 10 25 25 H 1.07990 * 120.00095 * 354.45525 * 14 13 12 26 26 H 1.08997 * 109.47035 * 322.87826 * 17 16 13 27 27 H 1.09006 * 109.47428 * 202.87885 * 17 16 13 28 28 H 1.07994 * 119.91688 * 179.72515 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6778 -4.1679 1.2003 12 6 3.5733 -5.2161 1.2087 13 6 4.0293 -5.7510 -0.0006 14 6 4.9857 -6.8696 -0.0006 15 8 5.3019 -7.3968 -1.0457 16 6 3.5727 -5.2167 -1.2094 17 6 4.0572 -5.7860 -2.5179 18 17 3.0860 -7.2469 -2.9343 19 6 2.6816 -4.1642 -1.2011 20 1 -0.4849 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8902 22 1 0.6247 -2.5570 0.8897 23 1 2.3245 -3.7539 2.1332 24 1 3.9218 -5.6230 2.1464 25 1 5.4059 -7.2207 0.9302 26 1 5.1078 -6.0619 -2.4273 27 1 3.9443 -5.0387 -3.3034 28 1 2.3315 -3.7476 -2.1339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396108935.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:29 Heat of formation + Delta-G solvation = -48.607265 kcal Electronic energy + Delta-G solvation = -14037.480281 eV Core-core repulsion = 11464.212957 eV Total energy + Delta-G solvation = -2573.267324 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97839 -39.12906 -36.88989 -35.52387 -33.55496 -32.92994 -29.51259 -27.96893 -25.89609 -23.44071 -23.03753 -21.08122 -18.53336 -17.88644 -16.97188 -16.69985 -15.90323 -15.84877 -15.51617 -14.85926 -14.59479 -14.47895 -14.41114 -14.08792 -13.52871 -13.25778 -12.93574 -12.60477 -12.50765 -12.21448 -11.63031 -11.58375 -11.38138 -11.31911 -10.61986 -10.37762 -9.77281 -9.54204 -8.22732 -6.36171 -0.26018 0.33466 1.40389 1.42454 1.50517 1.60654 1.63982 2.39108 2.98956 3.09294 3.42979 3.58876 3.80899 4.12618 4.32747 4.38447 4.48901 4.58186 4.71175 4.92240 5.04982 5.28924 5.31799 5.36568 5.50431 5.71136 5.94266 5.98819 6.14642 6.59584 6.76260 7.32967 8.86784 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.035217 B = 0.005907 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.872747 B = 4738.908657 C = 5005.350766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.051 3.949 10 C -0.028 4.028 11 C -0.142 4.142 12 C -0.048 4.048 13 C -0.207 4.207 14 C 0.388 3.612 15 O -0.485 6.485 16 C -0.057 4.057 17 C 0.015 3.985 18 Cl -0.186 7.186 19 C -0.134 4.134 20 H 0.266 0.734 21 H 0.003 0.997 22 H 0.011 0.989 23 H 0.130 0.870 24 H 0.177 0.823 25 H 0.157 0.843 26 H 0.124 0.876 27 H 0.100 0.900 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 -11.334 1.526 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.014 3.986 10 C -0.029 4.029 11 C -0.160 4.160 12 C -0.066 4.066 13 C -0.209 4.209 14 C 0.249 3.751 15 O -0.360 6.360 16 C -0.058 4.058 17 C -0.047 4.047 18 Cl -0.159 7.159 19 C -0.153 4.153 20 H 0.075 0.925 21 H 0.021 0.979 22 H 0.030 0.970 23 H 0.148 0.852 24 H 0.194 0.806 25 H 0.173 0.827 26 H 0.141 0.859 27 H 0.119 0.881 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.733 -11.621 0.927 15.187 hybrid contribution -0.454 1.329 -0.168 1.414 sum 9.279 -10.292 0.759 13.878 Atomic orbital electron populations 1.70070 1.07696 1.28100 1.50983 1.25901 0.95713 1.03073 0.94481 0.85505 0.78289 0.78109 0.79213 1.19423 1.20792 1.18993 1.21295 0.93146 0.90921 1.51397 0.92422 1.18197 0.92995 0.91106 0.96319 1.20683 0.94784 0.93578 0.93819 1.21269 0.99369 0.97755 0.97602 1.21672 0.93427 0.93211 0.98287 1.21023 1.04164 1.02502 0.93180 1.24588 0.77080 0.79005 0.94378 1.90481 1.54868 1.52874 1.37810 1.20084 0.95926 0.94951 0.94808 1.23331 0.98616 0.87673 0.95077 1.98695 1.76113 1.46842 1.94268 1.20920 0.98785 0.97494 0.98061 0.92518 0.97883 0.97048 0.85220 0.80580 0.82740 0.85855 0.88150 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.31 15 2 C 0.01 0.38 5.46 84.65 0.46 0.84 15 3 Si 0.96 42.84 29.54 68.60 2.03 44.86 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 7 C -0.53 -28.97 9.09 25.60 0.23 -28.73 15 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 15 9 C 0.05 2.59 5.09 29.10 0.15 2.74 15 10 C -0.03 -1.17 5.08 -19.78 -0.10 -1.27 15 11 C -0.14 -4.72 9.68 22.23 0.22 -4.51 15 12 C -0.05 -1.18 9.80 22.58 0.22 -0.95 15 13 C -0.21 -5.38 5.87 -20.15 -0.12 -5.50 15 14 C 0.39 7.80 11.40 70.17 0.80 8.60 15 15 O -0.48 -12.74 13.27 -2.95 -0.04 -12.78 15 16 C -0.06 -1.78 5.30 -19.56 -0.10 -1.88 15 17 C 0.01 0.41 5.88 71.24 0.42 0.83 15 18 Cl -0.19 -5.54 28.10 -2.72 -0.08 -5.62 15 19 C -0.13 -5.02 9.31 22.23 0.21 -4.81 15 20 H 0.27 14.73 8.31 -92.71 -0.77 13.96 15 21 H 0.00 0.16 8.08 -2.39 -0.02 0.14 15 22 H 0.01 0.61 8.08 -2.38 -0.02 0.59 15 23 H 0.13 4.16 8.06 -2.91 -0.02 4.13 15 24 H 0.18 2.49 8.06 -2.91 -0.02 2.47 15 25 H 0.16 1.48 8.06 -2.92 -0.02 1.46 15 26 H 0.12 3.28 5.88 -2.39 -0.01 3.27 15 27 H 0.10 2.57 8.03 -2.38 -0.02 2.55 15 28 H 0.11 4.36 8.05 -2.91 -0.02 4.34 15 Total: -1.00 -65.29 265.82 5.74 -59.55 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.16 Total: 2.93 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 2.38 Total: -34.63 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.28 Total: -54.31 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.04 Total: -12.78 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -5.54 SS G_CDS: -0.08 Total: -5.62 kcal Total: -65.29 5.74 -59.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396108935.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.939 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds