Wall clock time and date at job start Mon Mar 30 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 119.99829 * 2 1 4 4 H 1.48501 * 109.47171 * 274.66362 * 3 2 1 5 5 H 1.48502 * 109.47333 * 34.66668 * 3 2 1 6 6 H 1.48507 * 109.47106 * 154.66301 * 3 2 1 7 7 C 1.39946 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00086 * 162.23368 * 7 2 1 9 9 C 1.41396 * 120.00164 * 342.23019 * 7 2 1 10 10 C 1.40713 * 120.24208 * 155.28626 * 9 7 2 11 11 C 1.37619 * 119.74133 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25176 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.75052 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47265 * 90.00284 * 13 12 11 15 15 O 1.20765 * 119.99484 * 0.27414 * 14 13 12 16 16 C 1.50694 * 120.00232 * 179.97438 * 14 13 12 17 17 Cl 1.80301 * 109.47247 * 180.02562 * 16 14 13 18 18 C 1.38641 * 120.49758 * 0.25522 * 12 11 10 19 19 C 1.37619 * 120.24852 * 359.44676 * 18 12 11 20 20 H 0.97000 * 120.00609 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.13332 * 0.02562 * 10 9 7 22 22 H 1.08003 * 119.87457 * 180.02562 * 11 10 9 23 23 H 1.08998 * 109.47649 * 330.00319 * 13 12 11 24 24 H 1.09001 * 109.47063 * 209.99817 * 13 12 11 25 25 H 1.09006 * 109.47173 * 299.99631 * 16 14 13 26 26 H 1.08996 * 109.47135 * 59.99758 * 16 14 13 27 27 H 1.07999 * 119.87006 * 179.70078 * 18 12 11 28 28 H 1.07998 * 120.12816 * 180.27579 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3910 2.1034 -1.3954 5 1 1.4924 2.6222 0.7964 6 1 3.5855 1.4138 0.5992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3516 -2.4075 0.3726 10 6 1.8219 -3.6492 -0.0931 11 6 1.1749 -4.8064 0.2761 12 6 0.0636 -4.7518 1.1032 13 6 -0.6366 -6.0258 1.4999 14 6 -0.0276 -6.5587 2.7713 15 8 0.8779 -5.9624 3.3032 16 6 -0.5531 -7.8320 3.3825 17 17 0.3722 -8.2042 4.8845 18 6 -0.4119 -3.5334 1.5632 19 6 0.2229 -2.3641 1.2118 20 1 -0.4851 0.8400 0.0004 21 1 2.6872 -3.6941 -0.7378 22 1 1.5343 -5.7606 -0.0798 23 1 -0.5246 -6.7644 0.7062 24 1 -1.6954 -5.8234 1.6613 25 1 -1.6082 -7.7091 3.6273 26 1 -0.4379 -8.6506 2.6721 27 1 -1.2813 -3.5023 2.2032 28 1 -0.1465 -1.4164 1.5750 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396118587.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:59 Heat of formation + Delta-G solvation = -37.968411 kcal Electronic energy + Delta-G solvation = -13935.916734 eV Core-core repulsion = 11363.110745 eV Total energy + Delta-G solvation = -2572.805989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.25837 -37.32348 -35.90088 -33.92206 -31.68652 -29.77205 -29.25987 -27.35787 -24.13370 -21.03241 -20.48414 -19.17088 -17.30134 -15.84537 -15.57752 -15.42130 -15.09780 -14.06065 -13.75812 -13.59688 -13.11510 -12.78844 -12.52303 -11.95975 -11.60092 -11.50684 -11.07215 -11.02613 -10.85509 -10.57905 -10.52547 -10.44350 -9.68782 -9.41723 -9.33655 -9.09229 -7.44713 -7.29831 -6.76756 -4.34569 2.07184 2.21833 2.74328 3.06894 3.09237 3.11127 3.18595 3.93408 4.10338 4.63471 4.87570 5.00641 5.42479 5.63158 5.65445 5.94077 6.15068 6.31064 6.36506 6.94382 7.07134 7.27120 7.36239 7.61140 7.76544 7.86891 8.05877 8.08134 8.29964 8.64256 8.89839 8.97982 10.17938 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.051972 B = 0.004886 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.624602 B = 5729.691426 C = 5805.837868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.114 3.886 10 C -0.226 4.226 11 C -0.077 4.077 12 C -0.211 4.211 13 C -0.096 4.096 14 C 0.333 3.667 15 O -0.409 6.409 16 C -0.092 4.092 17 Cl -0.161 7.161 18 C -0.088 4.088 19 C -0.164 4.164 20 H 0.280 0.720 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -10.209 3.108 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.245 4.245 11 C -0.096 4.096 12 C -0.212 4.212 13 C -0.133 4.133 14 C 0.203 3.797 15 O -0.277 6.277 16 C -0.155 4.155 17 Cl -0.134 7.134 18 C -0.106 4.106 19 C -0.183 4.183 20 H 0.091 0.909 21 H 0.110 0.890 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.102 0.898 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.601 -9.737 3.504 10.957 hybrid contribution 0.184 0.612 -0.035 0.640 sum -3.417 -9.125 3.469 10.343 Atomic orbital electron populations 1.69821 1.07604 1.29194 1.35223 1.25914 0.94728 1.01338 0.92194 0.86325 0.80844 0.80700 0.79020 1.19575 1.20020 1.18400 1.19610 0.98113 0.91297 1.40100 0.90434 1.17625 0.90997 0.92015 0.88248 1.20936 1.03702 0.92943 1.06936 1.20291 0.95200 0.96324 0.97757 1.18519 1.01708 0.91892 1.09089 1.20704 1.00275 0.97724 0.94636 1.24986 0.83072 0.84478 0.87119 1.90484 1.23280 1.55303 1.58677 1.25099 0.99960 1.01183 0.89287 1.98729 1.78071 1.95219 1.41431 1.20456 0.98391 0.92778 0.99010 1.21265 0.99284 0.96687 1.01064 0.90895 0.89036 0.89761 0.89235 0.89132 0.86183 0.86206 0.89763 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.59 10.97 55.55 0.61 -19.98 15 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 15 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.46 -12.47 9.05 -37.74 -0.34 -12.81 15 8 H 0.08 2.02 7.91 -52.48 -0.41 1.60 15 9 C 0.11 3.09 5.57 -106.83 -0.60 2.49 15 10 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 15 11 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 15 12 C -0.21 -4.48 4.40 -104.33 -0.46 -4.94 15 13 C -0.10 -1.45 5.76 -29.04 -0.17 -1.61 15 14 C 0.33 5.03 7.19 -29.04 -0.21 4.82 15 15 O -0.41 -8.23 15.69 5.99 0.09 -8.14 15 16 C -0.09 -0.96 7.07 36.00 0.25 -0.70 15 17 Cl -0.16 -2.13 28.37 -51.86 -1.47 -3.60 15 18 C -0.09 -2.05 9.67 -39.66 -0.38 -2.44 15 19 C -0.16 -4.32 8.70 -38.87 -0.34 -4.66 15 20 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 21 H 0.09 2.16 8.06 -52.49 -0.42 1.74 15 22 H 0.08 1.65 8.06 -52.48 -0.42 1.23 15 23 H 0.09 1.12 8.08 -51.93 -0.42 0.70 15 24 H 0.09 1.16 8.08 -51.93 -0.42 0.74 15 25 H 0.12 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.12 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.08 1.76 8.06 -52.49 -0.42 1.34 15 28 H 0.12 3.18 6.18 -52.49 -0.32 2.86 15 LS Contribution 266.95 15.07 4.02 4.02 Total: -1.00 -30.23 266.95 -7.69 -37.93 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.83 Total: 2.12 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -3.09 Total: -26.17 kcal Atomic # 7 Polarization: -20.59 SS G_CDS: 0.61 Total: -19.98 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -1.47 Total: -3.60 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.23 -7.69 -37.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396118587.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.042 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds