Wall clock time and date at job start Mon Mar 30 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48508 * 109.47043 * 239.99562 * 3 2 1 5 5 H 1.48502 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47338 * 119.99789 * 3 2 1 7 7 C 1.39936 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00278 * 197.85154 * 7 2 1 9 9 C 1.41446 * 119.99844 * 17.85551 * 7 2 1 10 10 C 1.40806 * 120.16583 * 204.38794 * 9 7 2 11 11 C 1.37759 * 120.09914 * 180.02562 * 10 9 7 12 12 C 1.38293 * 120.44140 * 0.03450 * 11 10 9 13 13 C 1.40139 * 120.33342 * 359.97438 * 12 11 10 14 14 C 1.47221 * 120.05530 * 180.02562 * 13 12 11 15 15 O 1.21242 * 120.00125 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99619 * 359.97438 * 14 13 12 17 17 C 1.53010 * 109.46885 * 179.97438 * 16 14 13 18 18 Cl 1.80294 * 109.46870 * 180.02562 * 17 16 14 19 19 C 1.39322 * 119.89132 * 0.02562 * 13 12 11 20 20 H 0.96991 * 119.99941 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.95418 * 0.03413 * 10 9 7 22 22 H 1.07994 * 119.77822 * 180.02562 * 11 10 9 23 23 H 1.08001 * 119.83414 * 179.97438 * 12 11 10 24 24 H 1.08996 * 109.47374 * 299.99796 * 16 14 13 25 25 H 1.09004 * 109.46928 * 60.00242 * 16 14 13 26 26 H 1.09007 * 109.46542 * 300.00367 * 17 16 14 27 27 H 1.08998 * 109.46495 * 59.99786 * 17 16 14 28 28 H 1.07999 * 120.21404 * 179.72579 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0490 -1.2342 0.2873 9 6 1.3519 -2.4075 -0.3745 10 6 1.8274 -3.6501 0.0866 11 6 1.1876 -4.8137 -0.2800 12 6 0.0764 -4.7733 -1.1022 13 6 -0.4122 -3.5467 -1.5719 14 6 -1.5960 -3.5107 -2.4464 15 8 -2.0182 -2.4490 -2.8518 16 6 -2.2829 -4.7938 -2.8377 17 6 -3.4755 -4.4782 -3.7429 18 17 -4.2977 -6.0132 -4.2104 19 6 0.2240 -2.3613 -1.2098 20 1 -0.4849 0.8400 -0.0004 21 1 2.6948 -3.6910 0.7287 22 1 1.5565 -5.7639 0.0770 23 1 -0.4173 -5.6916 -1.3838 24 1 -1.5805 -5.4338 -3.3716 25 1 -2.6329 -5.3064 -1.9417 26 1 -4.1778 -3.8383 -3.2085 27 1 -3.1258 -3.9653 -4.6388 28 1 -0.1455 -1.4135 -1.5723 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396119210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:41 Heat of formation + Delta-G solvation = -61.108944 kcal Electronic energy + Delta-G solvation = -14025.566840 eV Core-core repulsion = 11451.757403 eV Total energy + Delta-G solvation = -2573.809438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75546 -38.80434 -37.02261 -35.62047 -33.54620 -31.88921 -31.28714 -27.38933 -26.03360 -23.24710 -22.64966 -20.52949 -19.10138 -17.57261 -16.82457 -16.70326 -16.45656 -16.15691 -15.09745 -14.80136 -14.76503 -14.29943 -14.11078 -13.59937 -13.40964 -12.95317 -12.82251 -12.68352 -12.52748 -12.21412 -11.91530 -11.60485 -11.49470 -11.33051 -11.07900 -10.49954 -9.51667 -9.39984 -8.68759 -6.39418 0.10731 1.00789 1.20742 1.35169 1.44797 1.48278 1.76155 2.17380 2.72999 3.24723 3.66429 3.66557 3.93429 4.28519 4.46522 4.56718 4.66173 4.71427 4.85963 4.95381 5.08127 5.19733 5.31072 5.51473 5.86164 5.93231 6.03728 6.28436 6.55908 6.68234 6.87218 6.92850 8.28175 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.005781 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.385012 B = 4841.956458 C = 5540.089716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.501 4.501 8 H 0.081 0.919 9 C 0.060 3.940 10 C -0.213 4.213 11 C -0.104 4.104 12 C -0.182 4.182 13 C -0.176 4.176 14 C 0.403 3.597 15 O -0.503 6.503 16 C -0.160 4.160 17 C -0.014 4.014 18 Cl -0.186 7.186 19 C -0.130 4.130 20 H 0.287 0.713 21 H 0.105 0.895 22 H 0.137 0.863 23 H 0.146 0.854 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -7.915 -4.222 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.530 4.530 8 H 0.099 0.901 9 C 0.058 3.942 10 C -0.233 4.233 11 C -0.122 4.122 12 C -0.201 4.201 13 C -0.177 4.177 14 C 0.284 3.716 15 O -0.383 6.383 16 C -0.197 4.197 17 C -0.076 4.076 18 Cl -0.159 7.159 19 C -0.150 4.150 20 H 0.097 0.903 21 H 0.124 0.876 22 H 0.155 0.845 23 H 0.163 0.837 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.962 -7.333 -4.450 9.448 hybrid contribution 0.354 1.004 0.227 1.088 sum -3.607 -6.329 -4.223 8.420 Atomic orbital electron populations 1.69860 1.09127 1.30659 1.35615 1.26808 0.95439 1.04817 0.91326 0.85262 0.78753 0.75589 0.80224 1.18532 1.19565 1.17811 1.19835 0.98568 0.92342 1.42305 0.90056 1.17963 0.92162 0.93792 0.90259 1.21465 1.03676 0.92957 1.05188 1.20983 0.95815 0.97566 0.97825 1.21087 0.99578 0.95750 1.03667 1.20428 0.98918 0.95145 1.03176 1.22899 0.82358 0.90224 0.76098 1.90464 1.63336 1.35455 1.49017 1.22268 0.97842 0.96736 1.02881 1.24075 0.95912 0.86028 1.01627 1.98705 1.82139 1.41345 1.93740 1.21648 0.98073 0.96752 0.98534 0.90260 0.87646 0.84517 0.83653 0.85150 0.85505 0.88641 0.88363 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.07 10.96 21.82 0.24 -44.83 15 2 C 0.03 1.59 5.14 85.25 0.44 2.03 15 3 Si 0.98 39.03 29.59 68.60 2.03 41.06 15 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 7 C -0.50 -26.99 9.05 23.47 0.21 -26.78 15 8 H 0.08 4.15 7.91 -2.91 -0.02 4.13 15 9 C 0.06 3.22 5.57 -21.33 -0.12 3.10 15 10 C -0.21 -9.78 9.78 22.78 0.22 -9.56 15 11 C -0.10 -3.98 10.00 22.17 0.22 -3.76 15 12 C -0.18 -6.70 9.48 22.74 0.22 -6.48 15 13 C -0.18 -7.71 5.86 -20.19 -0.12 -7.83 15 14 C 0.40 15.26 7.12 28.05 0.20 15.46 15 15 O -0.50 -22.54 15.96 -2.91 -0.05 -22.59 15 16 C -0.16 -4.02 4.43 29.85 0.13 -3.88 15 17 C -0.01 -0.32 5.95 71.99 0.43 0.11 15 18 Cl -0.19 -4.06 29.15 -2.72 -0.08 -4.14 15 19 C -0.13 -6.95 8.24 23.06 0.19 -6.76 15 20 H 0.29 14.40 8.30 -92.72 -0.77 13.64 15 21 H 0.11 4.51 8.06 -2.91 -0.02 4.48 15 22 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 23 H 0.15 3.96 7.02 -2.91 -0.02 3.94 15 24 H 0.13 2.72 8.08 -2.39 -0.02 2.70 15 25 H 0.13 2.75 8.08 -2.38 -0.02 2.73 15 26 H 0.10 2.33 8.10 -2.38 -0.02 2.31 15 27 H 0.10 2.33 8.10 -2.39 -0.02 2.31 15 28 H 0.10 5.89 5.74 -2.91 -0.02 5.87 15 Total: -1.00 -62.00 265.03 5.33 -56.67 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.17 Total: 18.19 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 2.02 Total: -44.36 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.24 Total: -44.83 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 17 Polarization: -4.06 SS G_CDS: -0.08 Total: -4.14 kcal Total: -62.00 5.33 -56.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396119210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.442 kcal (2) G-P(sol) polarization free energy of solvation -62.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds