Wall clock time and date at job start Mon Mar 30 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86794 * 120.00119 * 2 1 4 4 H 1.48507 * 109.47155 * 274.66128 * 3 2 1 5 5 H 1.48498 * 109.47305 * 34.66218 * 3 2 1 6 6 H 1.48498 * 109.47275 * 154.66306 * 3 2 1 7 7 C 1.40332 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00400 * 162.20976 * 7 2 1 9 9 C 1.40991 * 119.99909 * 342.21250 * 7 2 1 10 10 C 1.40968 * 120.07888 * 155.01722 * 9 7 2 11 11 C 1.36203 * 119.92291 * 180.02562 * 10 9 7 12 12 C 1.40324 * 120.07787 * 359.97438 * 11 10 9 13 13 C 1.46868 * 119.92102 * 180.02562 * 12 11 10 14 14 O 1.21313 * 120.00102 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99592 * 179.97438 * 13 12 11 16 16 C 1.53006 * 109.46844 * 179.97438 * 15 13 12 17 17 Cl 1.80296 * 109.46939 * 179.97438 * 16 15 13 18 18 C 1.40311 * 120.15176 * 0.27411 * 12 11 10 19 19 C 1.36204 * 120.08086 * 359.44781 * 18 12 11 20 20 H 0.97000 * 119.99751 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.03845 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.96182 * 179.97438 * 11 10 9 23 23 H 1.08999 * 109.47302 * 299.99665 * 15 13 12 24 24 H 1.09002 * 109.47086 * 60.00207 * 15 13 12 25 25 H 1.08999 * 109.47276 * 300.00144 * 16 15 13 26 26 H 1.09002 * 109.46732 * 60.00453 * 16 15 13 27 27 H 1.08001 * 119.95414 * 179.70464 * 18 12 11 28 28 H 1.08001 * 120.04168 * 180.27206 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.3889 2.1033 -1.3955 5 1 1.4901 2.6222 0.7963 6 1 3.5832 1.4137 0.5991 7 6 2.0075 -1.2153 -0.0005 8 1 3.0488 -1.2376 -0.2863 9 6 1.3531 -2.4073 0.3719 10 6 1.8236 -3.6491 -0.1012 11 6 1.1886 -4.7986 0.2603 12 6 0.0678 -4.7478 1.1029 13 6 -0.6139 -5.9895 1.4909 14 8 -0.2081 -7.0574 1.0826 15 6 -1.8175 -5.9370 2.3963 16 6 -2.3332 -7.3564 2.6419 17 17 -3.7727 -7.2937 3.7257 18 6 -0.4064 -3.5132 1.5715 19 6 0.2271 -2.3602 1.2187 20 1 -0.4850 0.8401 -0.0004 21 1 2.6860 -3.6889 -0.7501 22 1 1.5483 -5.7503 -0.1022 23 1 -1.5377 -5.4822 3.3465 24 1 -2.6006 -5.3427 1.9255 25 1 -2.6130 -7.8109 1.6915 26 1 -1.5502 -7.9511 3.1125 27 1 -1.2722 -3.4774 2.2161 28 1 -0.1358 -1.4105 1.5832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396121948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:30 Heat of formation + Delta-G solvation = -63.812773 kcal Electronic energy + Delta-G solvation = -13855.064076 eV Core-core repulsion = 11281.137391 eV Total energy + Delta-G solvation = -2573.926685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56923 -38.85691 -36.99204 -35.71344 -33.50999 -31.91475 -31.30136 -28.12434 -25.38549 -23.19443 -22.60956 -20.38618 -19.39070 -17.71978 -17.15133 -16.60780 -16.26158 -15.75929 -15.07377 -14.71474 -14.66431 -14.21575 -13.96841 -13.77720 -13.34779 -13.22466 -12.84097 -12.70186 -12.59505 -12.35208 -11.80168 -11.59560 -11.36081 -11.31608 -11.12923 -10.36118 -9.59043 -9.45574 -8.84447 -6.52612 0.21096 1.16979 1.25182 1.33368 1.39999 1.53919 1.84204 2.14636 2.68868 3.44571 3.65335 3.75582 3.96552 4.33664 4.41854 4.48051 4.75091 4.75897 4.90359 4.93961 4.99931 5.17169 5.29074 5.58023 5.86207 5.94929 5.99745 6.19986 6.51936 6.72265 6.86642 6.88777 8.10124 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.043690 B = 0.004950 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.720134 B = 5655.518795 C = 6210.650431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.104 3.896 10 C -0.260 4.260 11 C -0.032 4.032 12 C -0.329 4.329 13 C 0.408 3.592 14 O -0.531 6.531 15 C -0.165 4.165 16 C -0.009 4.009 17 Cl -0.192 7.192 18 C -0.043 4.043 19 C -0.206 4.206 20 H 0.299 0.701 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.130 0.870 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 -2.437 4.551 6.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.493 4.493 8 H 0.105 0.895 9 C 0.101 3.899 10 C -0.279 4.279 11 C -0.050 4.050 12 C -0.331 4.331 13 C 0.295 3.705 14 O -0.415 6.415 15 C -0.202 4.202 16 C -0.071 4.071 17 Cl -0.166 7.166 18 C -0.062 4.062 19 C -0.225 4.225 20 H 0.111 0.889 21 H 0.120 0.880 22 H 0.122 0.878 23 H 0.136 0.864 24 H 0.133 0.867 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.148 0.852 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.909 -2.823 4.420 6.541 hybrid contribution 0.337 0.735 -0.248 0.846 sum -3.572 -2.088 4.172 5.876 Atomic orbital electron populations 1.69729 1.09311 1.31905 1.30432 1.26981 0.95568 1.04938 0.90789 0.85092 0.79289 0.75186 0.79707 1.18508 1.18476 1.18034 1.20203 0.98799 0.92259 1.38043 0.89500 1.18192 0.91187 0.92871 0.87689 1.20873 1.05409 0.93007 1.08636 1.20698 0.93617 0.96906 0.93822 1.19762 1.04769 0.94245 1.14310 1.22210 0.83431 0.87305 0.77517 1.90414 1.65773 1.33032 1.52256 1.22227 0.97779 0.97970 1.02265 1.24075 0.88367 0.98354 0.96350 1.98704 1.48301 1.99096 1.70497 1.20932 0.97445 0.91350 0.96456 1.21046 1.00650 0.97712 1.03085 0.88933 0.87996 0.87822 0.86385 0.86665 0.88394 0.88244 0.85226 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.80 10.97 21.89 0.24 -36.56 15 2 C 0.04 1.69 5.13 85.39 0.44 2.13 15 3 Si 0.99 33.69 29.60 68.60 2.03 35.72 15 4 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 5 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 6 H -0.26 -8.69 7.11 99.48 0.71 -7.99 15 7 C -0.47 -23.00 9.04 23.45 0.21 -22.79 15 8 H 0.09 4.10 7.91 -2.91 -0.02 4.08 15 9 C 0.10 5.27 5.57 -21.27 -0.12 5.16 15 10 C -0.26 -12.57 9.73 22.46 0.22 -12.35 15 11 C -0.03 -1.47 9.53 22.30 0.21 -1.25 15 12 C -0.33 -14.08 5.89 -20.01 -0.12 -14.19 15 13 C 0.41 15.07 7.11 27.95 0.20 15.27 15 14 O -0.53 -21.83 15.95 -3.13 -0.05 -21.88 15 15 C -0.16 -4.45 4.41 29.85 0.13 -4.32 15 16 C -0.01 -0.21 5.95 71.98 0.43 0.22 15 17 Cl -0.19 -4.48 29.15 -2.72 -0.08 -4.56 15 18 C -0.04 -1.82 9.40 22.30 0.21 -1.61 15 19 C -0.21 -9.91 8.63 22.46 0.19 -9.71 15 20 H 0.30 12.30 8.29 -92.71 -0.77 11.53 15 21 H 0.10 4.65 8.06 -2.91 -0.02 4.62 15 22 H 0.10 4.56 7.63 -2.91 -0.02 4.54 15 23 H 0.12 2.87 8.08 -2.39 -0.02 2.85 15 24 H 0.12 2.88 8.07 -2.39 -0.02 2.86 15 25 H 0.10 2.37 8.10 -2.39 -0.02 2.35 15 26 H 0.10 2.37 8.10 -2.39 -0.02 2.35 15 27 H 0.13 4.46 7.01 -2.91 -0.02 4.44 15 28 H 0.11 5.48 6.18 -2.91 -0.02 5.46 15 Total: -1.00 -54.54 264.77 5.32 -49.23 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 1.17 Total: 21.52 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 2.01 Total: -43.46 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.24 Total: -36.56 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 33.69 SS G_CDS: 2.03 Total: 35.72 kcal Atomic # 17 Polarization: -4.48 SS G_CDS: -0.08 Total: -4.56 kcal Total: -54.54 5.32 -49.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396121948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.587 kcal (2) G-P(sol) polarization free energy of solvation -54.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds