Wall clock time and date at job start Mon Mar 30 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30563 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48504 * 109.47251 * 90.00475 * 3 2 1 5 5 H 1.48500 * 109.46896 * 210.00101 * 3 2 1 6 6 H 1.48495 * 109.47277 * 330.00259 * 3 2 1 7 7 C 1.40393 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99623 * 158.45900 * 7 2 1 9 9 C 1.40721 * 120.00416 * 338.45480 * 7 2 1 10 10 C 1.40825 * 120.62066 * 326.82227 * 9 7 2 11 11 C 1.37513 * 119.86599 * 179.97438 * 10 9 7 12 12 C 1.38721 * 121.22132 * 0.02562 * 11 10 9 13 13 C 1.38013 * 121.31463 * 0.02562 * 12 11 10 14 14 C 1.39692 * 120.01545 * 359.68743 * 13 12 11 15 15 C 1.46601 * 120.58721 * 180.30264 * 14 13 12 16 16 O 1.21344 * 119.99878 * 174.46124 * 15 14 13 17 17 C 1.50701 * 120.00239 * 354.45609 * 15 14 13 18 18 C 1.53001 * 109.47148 * 180.02562 * 17 15 14 19 19 Cl 1.80301 * 109.46972 * 180.02562 * 18 17 15 20 20 H 0.96996 * 120.00354 * 174.44014 * 1 2 3 21 21 H 1.08005 * 120.07049 * 359.95139 * 10 9 7 22 22 H 1.07997 * 119.38763 * 179.97438 * 11 10 9 23 23 H 1.08001 * 119.34089 * 179.97438 * 12 11 10 24 24 H 1.08001 * 119.99095 * 180.02562 * 13 12 11 25 25 H 1.09006 * 109.47169 * 300.00359 * 17 15 14 26 26 H 1.09004 * 109.46792 * 60.00017 * 17 15 14 27 27 H 1.08998 * 109.46829 * 299.99781 * 18 17 15 28 28 H 1.08997 * 109.47387 * 59.99901 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 2.4873 2.0463 1.4001 5 1 3.5372 1.4400 -0.7001 6 1 1.4372 2.6526 -0.6999 7 6 2.0075 -1.2159 -0.0005 8 1 3.0309 -1.2485 -0.3440 9 6 1.3776 -2.3922 0.4465 10 6 0.4197 -2.3455 1.4777 11 6 -0.1867 -3.5045 1.9021 12 6 0.1268 -4.7300 1.3329 13 6 1.0586 -4.8332 0.3201 14 6 1.7027 -3.6888 -0.1562 15 6 2.6897 -3.7831 -1.2360 16 8 3.1684 -2.7739 -1.7102 17 6 3.1100 -5.1333 -1.7570 18 6 4.1419 -4.9511 -2.8719 19 17 4.6441 -6.5665 -3.4957 20 1 -0.4850 -0.8360 -0.0814 21 1 0.1621 -1.4014 1.9347 22 1 -0.9198 -3.4598 2.6938 23 1 -0.3677 -5.6213 1.6899 24 1 1.2860 -5.7983 -0.1081 25 1 3.5499 -5.7146 -0.9466 26 1 2.2391 -5.6583 -2.1497 27 1 3.7023 -4.3697 -3.6823 28 1 5.0126 -4.4262 -2.4789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396123523.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:33 Heat of formation + Delta-G solvation = -51.403950 kcal Electronic energy + Delta-G solvation = -14291.544524 eV Core-core repulsion = 11718.155927 eV Total energy + Delta-G solvation = -2573.388598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75848 -36.87421 -35.83615 -34.15656 -32.00014 -29.94034 -29.46855 -25.74579 -24.09358 -21.85385 -20.87018 -18.65034 -18.03890 -15.85735 -15.28649 -14.92368 -14.64820 -14.20256 -13.72426 -13.42237 -13.06020 -12.57150 -12.46982 -12.09575 -11.93306 -11.33107 -11.23982 -10.95069 -10.81921 -10.49958 -10.45135 -10.21925 -10.19359 -9.68823 -9.21152 -8.46520 -7.85723 -7.71131 -7.32619 -4.65595 1.91749 2.38725 2.66672 3.09377 3.21277 3.30261 3.57299 3.89026 4.43581 4.87481 5.09749 5.13311 5.30298 5.62181 5.85898 5.96614 6.02036 6.08447 6.23556 6.66011 6.68181 6.85613 7.21220 7.42087 7.48651 7.66721 7.74274 7.94302 8.05252 8.57580 8.62854 8.76596 9.81168 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.007704 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.933912 B = 3633.827852 C = 4729.184000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.031 3.969 3 Si 1.072 2.928 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.104 0.896 9 C 0.119 3.881 10 C -0.210 4.210 11 C -0.067 4.067 12 C -0.266 4.266 13 C -0.028 4.028 14 C -0.305 4.305 15 C 0.390 3.610 16 O -0.478 6.478 17 C -0.173 4.173 18 C -0.011 4.011 19 Cl -0.204 7.204 20 H 0.302 0.698 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -5.287 -1.630 6.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.193 4.193 3 Si 0.895 3.105 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.479 4.479 8 H 0.122 0.878 9 C 0.115 3.885 10 C -0.229 4.229 11 C -0.086 4.086 12 C -0.285 4.285 13 C -0.047 4.047 14 C -0.307 4.307 15 C 0.275 3.725 16 O -0.359 6.359 17 C -0.211 4.211 18 C -0.074 4.074 19 Cl -0.178 7.178 20 H 0.115 0.885 21 H 0.124 0.876 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.657 -3.258 -1.880 5.246 hybrid contribution -0.071 -2.072 0.085 2.075 sum 3.586 -5.330 -1.795 6.670 Atomic orbital electron populations 1.70329 1.08338 1.34714 1.26446 1.27408 0.95645 1.04913 0.91320 0.83521 0.75765 0.72917 0.78307 1.19795 1.19547 1.19881 1.21218 1.02106 0.92296 1.32321 0.87807 1.18634 0.89278 0.91581 0.89047 1.21229 1.03791 0.97108 1.00792 1.20689 0.97182 0.93152 0.97543 1.20185 1.06778 0.96437 1.05133 1.20887 0.93750 0.95830 0.94203 1.20794 1.10043 0.94537 1.05347 1.21592 0.80753 0.88169 0.82025 1.90461 1.51082 1.38355 1.56042 1.22325 0.99677 1.00453 0.98651 1.24193 1.00782 0.83259 0.99173 1.98689 1.93051 1.36432 1.89658 0.88455 0.87635 0.88996 0.88976 0.88431 0.88550 0.88622 0.88480 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.87 12.56 55.57 0.70 -19.17 15 2 C 0.03 0.77 5.00 -17.28 -0.09 0.68 15 3 Si 1.07 21.26 29.99 -169.99 -5.10 16.16 15 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 7 C -0.45 -11.85 7.76 -37.83 -0.29 -12.14 15 8 H 0.10 2.79 6.11 -52.48 -0.32 2.47 15 9 C 0.12 3.04 5.31 -104.60 -0.56 2.49 15 10 C -0.21 -5.09 7.95 -38.87 -0.31 -5.40 15 11 C -0.07 -1.45 9.97 -39.67 -0.40 -1.84 15 12 C -0.27 -5.48 9.98 -39.49 -0.39 -5.88 15 13 C -0.03 -0.58 9.47 -39.12 -0.37 -0.95 15 14 C -0.30 -7.08 6.06 -102.60 -0.62 -7.70 15 15 C 0.39 8.29 7.08 -30.94 -0.22 8.07 15 16 O -0.48 -11.44 13.43 5.50 0.07 -11.37 15 17 C -0.17 -2.75 4.53 -27.88 -0.13 -2.88 15 18 C -0.01 -0.17 5.95 37.16 0.22 0.05 15 19 Cl -0.20 -2.78 29.15 -51.86 -1.51 -4.30 15 20 H 0.30 7.92 6.72 -40.82 -0.27 7.65 15 21 H 0.11 2.59 6.98 -52.48 -0.37 2.23 15 22 H 0.09 1.74 8.06 -52.49 -0.42 1.32 15 23 H 0.09 1.65 8.06 -52.49 -0.42 1.23 15 24 H 0.10 1.68 7.02 -52.49 -0.37 1.31 15 25 H 0.10 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.10 1.41 7.93 -51.93 -0.41 1.00 15 27 H 0.10 1.43 8.10 -51.93 -0.42 1.01 15 28 H 0.10 1.41 8.10 -51.93 -0.42 0.99 15 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -26.85 260.72 -7.71 -34.56 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -2.65 Total: 5.69 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.15 Total: -25.50 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.70 Total: -19.17 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.10 Total: 16.16 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -1.51 Total: -4.30 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.85 -7.71 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123523.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.849 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds