Wall clock time and date at job start Mon Mar 30 2020 05:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30563 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48504 * 109.47251 * 90.00475 * 3 2 1 5 5 H 1.48500 * 109.46896 * 210.00101 * 3 2 1 6 6 H 1.48495 * 109.47277 * 330.00259 * 3 2 1 7 7 C 1.40393 * 119.99390 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99623 * 158.45900 * 7 2 1 9 9 C 1.40721 * 120.00416 * 338.45480 * 7 2 1 10 10 C 1.40825 * 120.62066 * 326.82227 * 9 7 2 11 11 C 1.37513 * 119.86599 * 179.97438 * 10 9 7 12 12 C 1.38721 * 121.22132 * 0.02562 * 11 10 9 13 13 C 1.38013 * 121.31463 * 0.02562 * 12 11 10 14 14 C 1.39692 * 120.01545 * 359.68743 * 13 12 11 15 15 C 1.46601 * 120.58721 * 180.30264 * 14 13 12 16 16 O 1.21344 * 119.99878 * 174.46124 * 15 14 13 17 17 C 1.50701 * 120.00239 * 354.45609 * 15 14 13 18 18 C 1.53001 * 109.47148 * 180.02562 * 17 15 14 19 19 Cl 1.80301 * 109.46972 * 180.02562 * 18 17 15 20 20 H 0.96996 * 120.00354 * 174.44014 * 1 2 3 21 21 H 1.08005 * 120.07049 * 359.95139 * 10 9 7 22 22 H 1.07997 * 119.38763 * 179.97438 * 11 10 9 23 23 H 1.08001 * 119.34089 * 179.97438 * 12 11 10 24 24 H 1.08001 * 119.99095 * 180.02562 * 13 12 11 25 25 H 1.09006 * 109.47169 * 300.00359 * 17 15 14 26 26 H 1.09004 * 109.46792 * 60.00017 * 17 15 14 27 27 H 1.08998 * 109.46829 * 299.99781 * 18 17 15 28 28 H 1.08997 * 109.47387 * 59.99901 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 2.4873 2.0463 1.4001 5 1 3.5372 1.4400 -0.7001 6 1 1.4372 2.6526 -0.6999 7 6 2.0075 -1.2159 -0.0005 8 1 3.0309 -1.2485 -0.3440 9 6 1.3776 -2.3922 0.4465 10 6 0.4197 -2.3455 1.4777 11 6 -0.1867 -3.5045 1.9021 12 6 0.1268 -4.7300 1.3329 13 6 1.0586 -4.8332 0.3201 14 6 1.7027 -3.6888 -0.1562 15 6 2.6897 -3.7831 -1.2360 16 8 3.1684 -2.7739 -1.7102 17 6 3.1100 -5.1333 -1.7570 18 6 4.1419 -4.9511 -2.8719 19 17 4.6441 -6.5665 -3.4957 20 1 -0.4850 -0.8360 -0.0814 21 1 0.1621 -1.4014 1.9347 22 1 -0.9198 -3.4598 2.6938 23 1 -0.3677 -5.6213 1.6899 24 1 1.2860 -5.7983 -0.1081 25 1 3.5499 -5.7146 -0.9466 26 1 2.2391 -5.6583 -2.1497 27 1 3.7023 -4.3697 -3.6823 28 1 5.0126 -4.4262 -2.4789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396123523.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:32 Heat of formation + Delta-G solvation = -64.656335 kcal Electronic energy + Delta-G solvation = -14292.119191 eV Core-core repulsion = 11718.155927 eV Total energy + Delta-G solvation = -2573.963264 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47200 -38.60804 -37.00891 -35.93721 -33.43072 -31.64059 -31.21650 -27.48692 -25.64748 -23.45679 -22.60551 -20.28760 -19.83906 -17.46960 -16.67578 -16.56998 -16.36595 -15.79780 -15.38223 -14.93923 -14.62032 -14.25012 -13.92511 -13.77841 -13.40224 -12.96853 -12.69211 -12.59470 -12.47649 -12.06309 -11.93315 -11.58763 -11.42123 -11.34184 -10.99953 -10.17055 -9.61319 -9.55360 -9.17467 -6.55644 0.17508 0.91157 1.21122 1.45672 1.61447 1.75585 1.87460 2.25560 2.64367 3.46125 3.48400 3.74109 3.93906 4.25441 4.35552 4.43642 4.62808 4.73525 4.85494 4.90163 5.01508 5.08586 5.40367 5.61380 5.72887 5.79719 5.96373 6.12979 6.29114 6.71714 6.78932 7.08428 7.90999 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023022 B = 0.007704 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.933912 B = 3633.827852 C = 4729.184000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.000 4.000 3 Si 1.117 2.883 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.239 4.239 11 C -0.064 4.064 12 C -0.259 4.259 13 C -0.025 4.025 14 C -0.326 4.326 15 C 0.387 3.613 16 O -0.510 6.510 17 C -0.158 4.158 18 C -0.008 4.008 19 Cl -0.189 7.189 20 H 0.285 0.715 21 H 0.088 0.912 22 H 0.120 0.880 23 H 0.131 0.869 24 H 0.142 0.858 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -7.636 -1.570 8.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.218 4.218 3 Si 0.934 3.066 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.525 4.525 8 H 0.102 0.898 9 C 0.090 3.910 10 C -0.258 4.258 11 C -0.083 4.083 12 C -0.278 4.278 13 C -0.043 4.043 14 C -0.328 4.328 15 C 0.273 3.727 16 O -0.393 6.393 17 C -0.196 4.196 18 C -0.071 4.071 19 Cl -0.163 7.163 20 H 0.098 0.902 21 H 0.106 0.894 22 H 0.137 0.863 23 H 0.149 0.851 24 H 0.159 0.841 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.809 -5.635 -1.810 7.038 hybrid contribution -0.137 -1.647 0.076 1.655 sum 3.672 -7.282 -1.734 8.338 Atomic orbital electron populations 1.70438 1.08796 1.33471 1.29658 1.28601 0.95733 1.07567 0.89902 0.82993 0.74698 0.69674 0.79230 1.18060 1.19290 1.19130 1.21160 1.01797 0.93826 1.35702 0.89782 1.19078 0.89771 0.92792 0.89361 1.21187 1.05382 0.97631 1.01614 1.21082 0.96733 0.92787 0.97660 1.20716 1.05853 0.97166 1.04066 1.21337 0.92591 0.96670 0.93669 1.21363 1.10795 0.94709 1.05980 1.22199 0.79486 0.90046 0.80989 1.90455 1.51839 1.40360 1.56625 1.22206 1.00895 0.96896 0.99598 1.24027 1.00375 0.83963 0.98695 1.98695 1.92883 1.35268 1.89421 0.90212 0.89419 0.86253 0.85106 0.84077 0.86410 0.86509 0.88867 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.02 12.56 21.90 0.28 -42.74 15 2 C 0.00 -0.02 5.00 85.41 0.43 0.41 15 3 Si 1.12 44.38 29.99 68.60 2.06 46.44 15 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 6 H -0.27 -10.16 7.11 99.48 0.71 -9.46 15 7 C -0.50 -27.36 7.76 23.40 0.18 -27.18 15 8 H 0.08 4.81 6.11 -2.91 -0.02 4.79 15 9 C 0.09 4.93 5.31 -19.85 -0.11 4.83 15 10 C -0.24 -11.83 7.95 22.73 0.18 -11.64 15 11 C -0.06 -2.67 9.97 22.21 0.22 -2.45 15 12 C -0.26 -9.70 9.98 22.33 0.22 -9.48 15 13 C -0.02 -0.93 9.47 22.57 0.21 -0.72 15 14 C -0.33 -14.91 6.06 -18.55 -0.11 -15.03 15 15 C 0.39 16.15 7.08 27.87 0.20 16.34 15 16 O -0.51 -24.89 13.43 -3.23 -0.04 -24.93 15 17 C -0.16 -4.56 4.53 29.85 0.14 -4.42 15 18 C -0.01 -0.21 5.95 71.98 0.43 0.22 15 19 Cl -0.19 -4.59 29.15 -2.72 -0.08 -4.67 15 20 H 0.29 15.88 6.72 -92.71 -0.62 15.25 15 21 H 0.09 4.54 6.98 -2.91 -0.02 4.52 15 22 H 0.12 4.23 8.06 -2.91 -0.02 4.21 15 23 H 0.13 3.94 8.06 -2.91 -0.02 3.91 15 24 H 0.14 4.06 7.02 -2.91 -0.02 4.04 15 25 H 0.12 2.95 8.14 -2.38 -0.02 2.93 15 26 H 0.12 2.93 7.93 -2.38 -0.02 2.91 15 27 H 0.09 2.60 8.10 -2.39 -0.02 2.58 15 28 H 0.09 2.61 8.10 -2.39 -0.02 2.59 15 Total: -1.00 -60.59 260.72 5.51 -55.07 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.32 Total: 19.94 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 1.99 Total: -49.11 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.28 Total: -42.74 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.06 Total: 46.44 kcal Atomic # 17 Polarization: -4.59 SS G_CDS: -0.08 Total: -4.67 kcal Total: -60.59 5.51 -55.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123523.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.582 kcal (2) G-P(sol) polarization free energy of solvation -60.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds