Wall clock time and date at job start Mon Mar 30 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38474 * 119.81397 * 2 1 4 4 C 1.37813 * 120.21473 * 180.02562 * 3 2 1 5 5 C 1.39915 * 119.83747 * 359.97438 * 4 3 2 6 6 C 1.47070 * 120.18464 * 180.02562 * 5 4 3 7 7 O 1.21263 * 119.99918 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99933 * 359.97438 * 6 5 4 9 9 C 1.50696 * 109.46909 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00139 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99930 * 180.02562 * 9 8 6 12 12 N 1.31513 * 119.99880 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99885 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47403 * 90.00254 * 13 11 9 15 15 H 1.48502 * 109.46876 * 210.00405 * 13 11 9 16 16 H 1.48501 * 109.47116 * 329.99927 * 13 11 9 17 17 C 1.39985 * 119.63126 * 0.02562 * 5 4 3 18 18 Cl 1.73599 * 120.10531 * 179.97438 * 17 5 4 19 19 C 1.38098 * 119.78128 * 0.25431 * 17 5 4 20 20 H 1.09000 * 109.47031 * 89.99915 * 1 2 3 21 21 H 1.09002 * 109.47276 * 209.99775 * 1 2 3 22 22 H 1.08995 * 109.47292 * 329.99901 * 1 2 3 23 23 H 1.08000 * 119.89050 * 0.02562 * 3 2 1 24 24 H 1.07998 * 120.07917 * 179.97438 * 4 3 2 25 25 H 1.08999 * 109.46991 * 299.99460 * 8 6 5 26 26 H 1.09000 * 109.46823 * 59.99555 * 8 6 5 27 27 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 28 28 H 1.08004 * 119.91824 * 179.75053 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2015 0.0000 4 6 3.5736 1.2111 -0.0005 5 6 4.2782 0.0023 -0.0005 6 6 5.7489 0.0037 -0.0005 7 8 6.3562 -1.0459 -0.0001 8 6 6.5012 1.3096 -0.0011 9 6 7.9830 1.0355 -0.0004 10 1 8.3439 0.0176 0.0009 11 6 8.8780 2.0844 -0.0002 12 7 10.1712 1.8452 0.0010 13 14 8.2537 3.8449 -0.0016 14 1 8.0872 4.3123 1.3980 15 1 9.2316 4.7163 -0.7014 16 1 6.9460 3.9059 -0.7027 17 6 3.5755 -1.2084 -0.0005 18 17 4.4373 -2.7154 -0.0012 19 6 2.1946 -1.2000 -0.0059 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.6507 2.1340 0.0004 24 1 4.1083 2.1494 -0.0009 25 1 6.2374 1.8804 -0.8914 26 1 6.2372 1.8813 0.8886 27 1 10.8009 2.5831 0.0008 28 1 1.6502 -2.1328 -0.0099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404712239.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:37 Heat of formation + Delta-G solvation = -42.466185 kcal Electronic energy + Delta-G solvation = -14087.149097 eV Core-core repulsion = 11514.148069 eV Total energy + Delta-G solvation = -2573.001027 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97979 -39.27358 -37.43079 -35.04955 -33.94273 -32.08538 -31.44252 -28.55626 -25.53774 -23.67778 -22.94880 -20.63266 -19.12629 -17.65544 -17.04813 -16.53160 -16.18542 -15.98114 -15.41075 -14.88360 -14.77104 -14.70691 -14.24621 -13.69245 -13.24780 -13.16780 -12.82302 -12.75645 -12.38900 -12.23115 -12.21301 -12.01124 -11.80600 -11.49636 -10.78909 -10.12917 -9.90662 -9.66613 -8.26997 -6.35692 -0.37551 0.20688 1.16179 1.38535 1.43353 1.53430 1.58279 2.38596 2.68143 3.06880 3.20839 3.72815 3.90364 4.18761 4.23941 4.40269 4.57067 4.71107 4.82221 4.90131 4.90533 5.06906 5.16229 5.24421 5.27191 5.46455 5.56184 5.81567 6.26861 6.77018 6.86129 7.28111 8.90753 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.007400 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.730624 B = 3783.003695 C = 4709.286804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 C -0.124 4.124 4 C -0.058 4.058 5 C -0.188 4.188 6 C 0.384 3.616 7 O -0.472 6.472 8 C -0.052 4.052 9 C -0.539 4.539 10 H 0.027 0.973 11 C 0.000 4.000 12 N -0.956 5.956 13 Si 0.959 3.041 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.225 1.225 17 C -0.007 4.007 18 Cl -0.066 7.066 19 C -0.132 4.132 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.172 0.828 24 H 0.154 0.846 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.268 0.732 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.811 1.511 -0.077 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.043 4.043 3 C -0.141 4.141 4 C -0.077 4.077 5 C -0.190 4.190 6 C 0.262 3.738 7 O -0.349 6.349 8 C -0.089 4.089 9 C -0.577 4.577 10 H 0.046 0.954 11 C -0.196 4.196 12 N -0.596 5.596 13 Si 0.780 3.220 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.148 1.148 17 C -0.034 4.034 18 Cl -0.037 7.037 19 C -0.150 4.150 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.109 0.891 23 H 0.189 0.811 24 H 0.172 0.828 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.250 0.876 -0.078 24.266 hybrid contribution 1.142 0.020 0.021 1.143 sum -23.107 0.896 -0.057 23.125 Atomic orbital electron populations 1.20962 0.87230 1.04759 1.04099 1.20557 0.98485 0.91489 0.93727 1.21537 0.92875 0.99661 1.00063 1.21745 0.95350 0.96505 0.94070 1.20632 0.94918 0.94294 1.09167 1.23014 0.88363 0.91697 0.70685 1.90484 1.72160 1.35834 1.36384 1.19941 0.94434 0.94209 1.00334 1.21246 0.91023 0.94013 1.51414 0.95432 1.26193 0.94603 1.05252 0.93601 1.70107 1.03240 1.34052 1.52182 0.85559 0.80029 0.76708 0.79725 1.18523 1.21233 1.14761 1.21517 0.93500 0.86680 1.01720 1.98392 1.77924 1.31045 1.96299 1.21179 0.90121 1.00713 1.02988 0.89133 0.90181 0.89061 0.81059 0.82818 0.90867 0.91054 0.92369 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.00 71.24 0.71 -0.29 15 2 C -0.04 -0.73 5.89 -19.79 -0.12 -0.85 15 3 C -0.12 -2.21 9.67 22.23 0.21 -1.99 15 4 C -0.06 -1.49 9.47 22.58 0.21 -1.28 15 5 C -0.19 -6.54 5.87 -20.13 -0.12 -6.66 15 6 C 0.38 17.48 7.10 28.01 0.20 17.68 15 7 O -0.47 -25.31 13.08 -2.98 -0.04 -25.35 15 8 C -0.05 -2.44 3.14 29.10 0.09 -2.35 15 9 C -0.54 -32.91 9.48 25.60 0.24 -32.66 15 10 H 0.03 1.97 7.00 -2.91 -0.02 1.94 15 11 C 0.00 -0.03 5.47 84.66 0.46 0.44 15 12 N -0.96 -62.16 13.96 21.45 0.30 -61.86 15 13 Si 0.96 42.20 27.47 68.60 1.88 44.08 15 14 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 15 H -0.29 -12.58 7.11 99.48 0.71 -11.88 15 16 H -0.23 -8.40 6.54 99.48 0.65 -7.75 15 17 C -0.01 -0.23 6.36 22.66 0.14 -0.08 15 18 Cl -0.07 -2.38 26.03 -2.72 -0.07 -2.45 15 19 C -0.13 -3.00 9.46 22.25 0.21 -2.79 15 20 H 0.09 0.62 8.14 -2.39 -0.02 0.60 15 21 H 0.08 0.60 8.08 -2.39 -0.02 0.58 15 22 H 0.09 0.52 8.08 -2.39 -0.02 0.50 15 23 H 0.17 1.71 8.06 -2.91 -0.02 1.69 15 24 H 0.15 3.47 7.05 -2.91 -0.02 3.45 15 25 H 0.07 3.09 7.15 -2.39 -0.02 3.08 15 26 H 0.07 2.98 7.51 -2.39 -0.02 2.96 15 27 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -78.79 260.65 5.44 -73.35 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: 1.11 Total: 3.06 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 2.26 Total: -30.84 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.30 Total: -61.86 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.35 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.08 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.07 Total: -2.45 kcal Total: -78.79 5.44 -73.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404712239.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.883 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds