Wall clock time and date at job start Mon Mar 30 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 S 1.81398 * 109.47213 * 270.02196 * 8 7 5 10 10 O 1.42096 * 109.47075 * 70.94334 * 9 8 7 11 11 C 1.76197 * 102.99741 * 179.97438 * 9 8 7 12 12 H 1.07992 * 120.00308 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99916 * 179.97438 * 11 9 8 14 14 N 1.31516 * 119.99606 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00141 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47092 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46921 * 120.00460 * 15 13 11 18 18 H 1.48496 * 109.47044 * 240.00390 * 15 13 11 19 19 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 21 21 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 22 22 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 23 23 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 24 24 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 25 25 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 26 26 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 27 27 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 28 28 H 1.09003 * 109.46716 * 30.02175 * 8 7 5 29 29 H 1.08993 * 109.46977 * 150.01843 * 8 7 5 30 30 H 0.96999 * 119.99725 * 179.97438 * 14 13 11 31 31 H 1.07996 * 120.00479 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 16 4.6364 -3.0274 -1.7081 10 8 5.6059 -2.1744 -2.3011 11 6 5.5123 -4.5430 -1.5081 12 1 5.7277 -4.9157 -0.5177 13 6 5.9218 -5.2540 -2.6163 14 7 5.6590 -4.8004 -3.8225 15 14 6.8498 -6.8613 -2.4044 16 1 7.0166 -7.1495 -0.9572 17 1 6.0850 -7.9623 -3.0430 18 1 8.1851 -6.7500 -3.0445 19 6 2.1980 -1.1970 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8898 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6584 2.1326 -0.0005 24 1 4.1205 2.1325 -0.0099 25 1 6.1418 -0.0013 -1.0291 26 1 6.1422 0.8902 0.5115 27 1 6.1421 -0.8897 0.5134 28 1 5.2865 -2.3715 0.5155 29 1 3.7449 -3.2614 0.5162 30 1 5.9475 -5.3004 -4.6021 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526869171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:44 Heat of formation + Delta-G solvation = -42.755770 kcal Electronic energy + Delta-G solvation = -14495.003966 eV Core-core repulsion = 12059.867183 eV Total energy + Delta-G solvation = -2435.136784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16290 -33.90210 -33.53476 -32.77627 -31.69684 -28.89257 -26.69637 -25.68139 -24.35883 -21.65684 -19.76667 -17.86286 -15.50723 -15.41800 -15.36257 -15.08046 -14.39880 -13.94366 -13.34337 -13.10539 -12.91549 -12.57212 -12.42606 -12.16409 -11.89659 -11.58045 -11.51360 -11.17935 -11.14790 -10.78513 -10.65998 -10.50605 -10.30646 -10.08648 -9.10946 -8.71838 -8.15948 -7.74325 -6.78818 -6.29826 -4.80284 1.76843 1.81438 3.09666 3.18006 3.23281 3.62087 4.13278 4.29736 4.86280 5.10637 5.14385 5.25150 5.42681 5.47592 5.54931 5.69326 5.76450 5.87717 5.95304 6.01949 6.14666 6.18024 6.31630 6.43226 6.55512 6.71482 6.81939 6.87837 6.97758 7.23714 7.47382 7.49402 8.19586 9.09104 10.47220 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.006618 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.753678 B = 4229.802658 C = 4536.719262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.117 4.117 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.032 4.032 8 C -0.451 4.451 9 S 1.350 4.650 10 O -0.893 6.893 11 C -0.827 4.827 12 H 0.079 0.921 13 C 0.120 3.880 14 N -0.855 5.855 15 Si 0.905 3.095 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.277 1.277 19 C -0.122 4.122 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.280 0.720 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 5.977 6.203 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.155 4.155 4 C -0.135 4.135 5 C -0.089 4.089 6 C -0.174 4.174 7 C -0.033 4.033 8 C -0.579 4.579 9 S 1.547 4.453 10 O -0.887 6.887 11 C -0.967 4.967 12 H 0.097 0.903 13 C -0.094 4.094 14 N -0.488 5.488 15 Si 0.730 3.270 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.203 1.203 19 C -0.141 4.141 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.652 6.452 5.224 12.732 hybrid contribution 2.635 -0.851 1.275 3.048 sum -7.018 5.601 6.499 11.084 Atomic orbital electron populations 1.20735 0.91642 1.02157 1.02074 1.19789 0.95612 0.93206 1.00923 1.20820 0.93978 0.97121 1.03629 1.20888 0.94118 0.97067 1.01397 1.19797 0.96169 0.92721 1.00260 1.20881 0.91542 1.01355 1.03646 1.19282 0.93228 0.93577 0.97214 1.27420 1.03341 0.98770 1.28364 1.69490 1.12262 0.83614 0.79915 1.92799 1.65386 1.65871 1.64690 1.27573 1.50425 1.21066 0.97678 0.90293 1.24759 0.92618 0.98023 0.93955 1.69906 1.42252 1.38341 0.98334 0.86376 0.79682 0.81875 0.79057 1.19146 1.19829 1.20295 1.20903 0.93252 0.97606 1.02364 0.91360 0.91721 0.92189 0.86835 0.86743 0.89599 0.92811 0.91771 0.90039 0.87918 0.91036 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.80 16 2 C -0.10 -1.37 5.88 -104.62 -0.62 -1.99 16 3 C -0.14 -1.99 9.70 -39.58 -0.38 -2.37 16 4 C -0.12 -1.88 9.70 -39.58 -0.38 -2.27 16 5 C -0.09 -1.66 5.88 -104.62 -0.62 -2.28 16 6 C -0.12 -2.24 9.41 36.01 0.34 -1.90 16 7 C -0.03 -0.60 5.14 -104.62 -0.54 -1.14 16 8 C -0.45 -9.17 5.60 36.01 0.20 -8.97 16 9 S 1.35 32.95 12.96 -107.50 -1.39 31.56 16 10 O -0.89 -26.65 17.04 -35.23 -0.60 -27.25 16 11 C -0.83 -22.50 9.38 30.60 0.29 -22.21 16 12 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 13 C 0.12 3.29 5.46 -17.82 -0.10 3.19 16 14 N -0.86 -24.33 13.15 55.43 0.73 -23.60 16 15 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.12 -1.97 9.36 -39.58 -0.37 -2.34 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 22 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 23 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 24 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 25 H 0.09 1.85 7.55 -51.93 -0.39 1.45 16 26 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 27 H 0.06 1.27 5.95 -51.93 -0.31 0.96 16 28 H 0.08 1.75 5.95 -51.92 -0.31 1.44 16 29 H 0.10 1.83 8.08 -51.93 -0.42 1.41 16 30 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 279.77 15.07 4.22 4.22 Total: -1.00 -33.50 279.77 -7.81 -41.31 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.93 Total: 1.17 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: -1.82 Total: -43.08 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.73 Total: -23.60 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.60 Total: -27.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 32.95 SS G_CDS: -1.39 Total: 31.56 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.50 -7.81 -41.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526869171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.450 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds