Wall clock time and date at job start Mon Mar 30 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 S 1.81398 * 109.47213 * 270.02196 * 8 7 5 10 10 O 1.42096 * 109.47075 * 70.94334 * 9 8 7 11 11 C 1.76197 * 102.99741 * 179.97438 * 9 8 7 12 12 H 1.07992 * 120.00308 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99916 * 179.97438 * 11 9 8 14 14 N 1.31516 * 119.99606 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00141 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47092 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46921 * 120.00460 * 15 13 11 18 18 H 1.48496 * 109.47044 * 240.00390 * 15 13 11 19 19 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 21 21 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 22 22 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 23 23 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 24 24 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 25 25 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 26 26 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 27 27 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 28 28 H 1.09003 * 109.46716 * 30.02175 * 8 7 5 29 29 H 1.08993 * 109.46977 * 150.01843 * 8 7 5 30 30 H 0.96999 * 119.99725 * 179.97438 * 14 13 11 31 31 H 1.07996 * 120.00479 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 16 4.6364 -3.0274 -1.7081 10 8 5.6059 -2.1744 -2.3011 11 6 5.5123 -4.5430 -1.5081 12 1 5.7277 -4.9157 -0.5177 13 6 5.9218 -5.2540 -2.6163 14 7 5.6590 -4.8004 -3.8225 15 14 6.8498 -6.8613 -2.4044 16 1 7.0166 -7.1495 -0.9572 17 1 6.0850 -7.9623 -3.0430 18 1 8.1851 -6.7500 -3.0445 19 6 2.1980 -1.1970 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8898 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6584 2.1326 -0.0005 24 1 4.1205 2.1325 -0.0099 25 1 6.1418 -0.0013 -1.0291 26 1 6.1422 0.8902 0.5115 27 1 6.1421 -0.8897 0.5134 28 1 5.2865 -2.3715 0.5155 29 1 3.7449 -3.2614 0.5162 30 1 5.9475 -5.3004 -4.6021 31 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526869171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:43 Heat of formation + Delta-G solvation = -64.601715 kcal Electronic energy + Delta-G solvation = -14495.951277 eV Core-core repulsion = 12059.867183 eV Total energy + Delta-G solvation = -2436.084095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42544 -35.75900 -35.10269 -34.81784 -33.04692 -30.07799 -28.33308 -27.61215 -25.56903 -22.94975 -21.13221 -19.81621 -17.46592 -17.03992 -16.80735 -16.61430 -15.73535 -15.58494 -14.97190 -14.58230 -14.22784 -13.94196 -13.78220 -13.59130 -13.49823 -13.28682 -12.95438 -12.85510 -12.67226 -12.56704 -12.31280 -12.02025 -11.71062 -11.67805 -11.10368 -10.56906 -9.54632 -9.25784 -8.72580 -8.33735 -6.93935 0.46171 0.55352 1.28822 1.32450 1.46038 1.82853 2.27622 2.77439 2.97424 3.31656 3.85762 3.93917 4.02940 4.12963 4.24942 4.34477 4.51447 4.65378 4.74631 4.77914 4.89072 4.97041 4.99907 5.02741 5.22227 5.34523 5.38924 5.46942 5.61444 5.79542 5.87952 6.08073 6.25485 6.98732 8.43279 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.006618 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.753678 B = 4229.802658 C = 4536.719262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.064 4.064 8 C -0.430 4.430 9 S 1.366 4.634 10 O -0.957 6.957 11 C -0.855 4.855 12 H 0.077 0.923 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.970 3.030 16 H -0.263 1.263 17 H -0.248 1.248 18 H -0.280 1.280 19 C -0.127 4.127 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.149 0.851 24 H 0.135 0.865 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.286 0.714 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 6.216 7.303 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.121 4.121 6 C -0.169 4.169 7 C -0.065 4.065 8 C -0.562 4.562 9 S 1.568 4.432 10 O -0.952 6.952 11 C -0.995 4.995 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.523 5.523 15 Si 0.792 3.208 16 H -0.187 1.187 17 H -0.172 1.172 18 H -0.206 1.206 19 C -0.146 4.146 20 H 0.098 0.902 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.167 0.833 24 H 0.152 0.848 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.096 0.904 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.795 6.672 6.285 14.938 hybrid contribution 3.172 -0.788 1.064 3.437 sum -8.623 5.884 7.349 12.766 Atomic orbital electron populations 1.20823 0.88490 1.03873 1.03285 1.20290 0.97875 0.92398 0.98681 1.21298 0.93404 0.98814 1.01459 1.21177 0.95252 0.96802 1.00819 1.19960 0.95776 0.94093 1.02308 1.20772 0.92743 1.01905 1.01450 1.19306 0.94588 0.92507 1.00089 1.27043 1.03459 1.01029 1.24654 1.68382 1.10952 0.81953 0.81880 1.92717 1.66682 1.67312 1.68499 1.27927 1.51179 1.22504 0.97856 0.90412 1.25731 0.93416 1.01698 0.93588 1.69987 1.43173 1.39988 0.99197 0.85386 0.78164 0.78058 0.79239 1.18725 1.17190 1.20593 1.21229 0.92133 0.99657 1.01586 0.90220 0.90452 0.90188 0.83317 0.84750 0.93170 0.89874 0.93616 0.91868 0.85314 0.90409 0.83406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.10 16 2 C -0.09 -2.35 5.88 -19.86 -0.12 -2.47 16 3 C -0.13 -3.36 9.70 22.27 0.22 -3.15 16 4 C -0.12 -3.74 9.70 22.27 0.22 -3.52 16 5 C -0.12 -4.52 5.88 -19.86 -0.12 -4.64 16 6 C -0.11 -4.44 9.41 71.24 0.67 -3.77 16 7 C -0.06 -2.39 5.14 -19.86 -0.10 -2.49 16 8 C -0.43 -17.74 5.60 71.24 0.40 -17.34 16 9 S 1.37 69.02 12.96 -56.49 -0.73 68.28 16 10 O -0.96 -60.09 17.04 -148.98 -2.54 -62.63 16 11 C -0.85 -47.58 9.38 67.74 0.64 -46.95 16 12 H 0.08 4.18 7.81 -2.91 -0.02 4.16 16 13 C 0.07 3.64 5.46 84.66 0.46 4.11 16 14 N -0.89 -51.66 13.15 21.45 0.28 -51.38 16 15 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.13 -3.83 9.36 22.27 0.21 -3.62 16 20 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 22 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 23 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 24 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 25 H 0.05 2.31 7.55 -2.39 -0.02 2.29 16 26 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 27 H 0.04 1.91 5.95 -2.39 -0.01 1.90 16 28 H 0.06 2.83 5.95 -2.39 -0.01 2.81 16 29 H 0.13 4.51 8.08 -2.39 -0.02 4.49 16 30 H 0.29 15.18 8.31 -92.71 -0.77 14.40 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -74.94 279.77 3.34 -71.60 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.11 Total: 14.54 kcal Atomic # 6 Polarization: -88.11 SS G_CDS: 3.19 Total: -84.93 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.28 Total: -51.38 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -2.54 Total: -62.63 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 69.02 SS G_CDS: -0.73 Total: 68.28 kcal Total: -74.94 3.34 -71.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526869171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.995 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds