Wall clock time and date at job start Mon Mar 30 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38261 * 119.99384 * 2 1 4 4 C 1.38206 * 119.99498 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00253 * 359.85521 * 4 3 2 6 6 C 1.50704 * 120.00196 * 180.20983 * 5 4 3 7 7 C 1.38211 * 119.99713 * 0.39267 * 5 4 3 8 8 C 1.50706 * 120.00088 * 179.81051 * 7 5 4 9 9 S 1.81400 * 109.47256 * 269.73400 * 8 7 5 10 10 O 1.42105 * 109.46686 * 289.05156 * 9 8 7 11 11 C 1.76194 * 102.99896 * 179.97438 * 9 8 7 12 12 H 1.08001 * 120.00374 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99939 * 179.97438 * 11 9 8 14 14 N 1.31513 * 119.99835 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99938 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47284 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46898 * 120.00154 * 15 13 11 18 18 H 1.48503 * 109.47219 * 240.00232 * 15 13 11 19 19 C 1.38205 * 120.00209 * 180.02562 * 2 1 3 20 20 H 1.08999 * 109.46874 * 269.97675 * 1 2 3 21 21 H 1.08993 * 109.47279 * 29.98540 * 1 2 3 22 22 H 1.09007 * 109.46768 * 149.98433 * 1 2 3 23 23 H 1.08001 * 120.00101 * 359.97438 * 3 2 1 24 24 H 1.08006 * 120.00156 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47203 * 270.18795 * 6 5 4 26 26 H 1.09004 * 109.47060 * 30.19002 * 6 5 4 27 27 H 1.08997 * 109.46864 * 150.18201 * 6 5 4 28 28 H 1.09001 * 109.46953 * 29.72877 * 8 7 5 29 29 H 1.09000 * 109.47318 * 149.72475 * 8 7 5 30 30 H 0.97003 * 119.99891 * 179.97438 * 14 13 11 31 31 H 1.08009 * 120.00262 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0041 6 6 5.7787 0.0002 0.0095 7 6 3.5807 -1.1968 -0.0011 8 6 4.3342 -2.5019 -0.0015 9 16 4.6356 -3.0256 -1.7119 10 8 3.4113 -3.4385 -2.3035 11 6 5.5118 -4.5414 -1.5138 12 1 5.7286 -4.9144 -0.5237 13 6 5.9206 -5.2514 -2.6228 14 7 5.6571 -4.7969 -3.8284 15 14 6.8502 -6.8580 -2.4127 16 1 7.0187 -7.1468 -0.9659 17 1 6.0855 -7.9593 -3.0510 18 1 8.1847 -6.7453 -3.0542 19 6 2.1981 -1.1969 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8900 -0.5136 22 1 -0.3633 -0.8899 -0.5141 23 1 1.6581 2.1327 -0.0004 24 1 4.1203 2.1328 0.0010 25 1 6.1457 0.0026 -1.0169 26 1 6.1402 0.8890 0.5267 27 1 6.1402 -0.8909 0.5226 28 1 5.2870 -2.3715 0.5117 29 1 3.7455 -3.2616 0.5128 30 1 5.9451 -5.2962 -4.6086 31 1 1.6582 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526869172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:46 Heat of formation + Delta-G solvation = -43.372832 kcal Electronic energy + Delta-G solvation = -14458.085183 eV Core-core repulsion = 12022.921641 eV Total energy + Delta-G solvation = -2435.163541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17754 -33.87756 -33.61190 -32.81063 -31.68917 -28.94610 -26.70807 -25.69456 -24.40550 -21.68587 -19.75845 -17.88144 -15.57861 -15.45698 -15.34206 -15.06687 -14.41034 -13.92389 -13.35050 -13.06923 -12.89164 -12.67673 -12.47639 -12.30175 -12.05497 -11.61825 -11.44453 -11.22876 -11.11931 -10.81881 -10.64906 -10.47982 -10.38514 -10.08669 -9.11679 -8.72611 -8.17256 -7.79298 -6.80630 -6.31350 -4.81786 1.74219 1.81713 3.09206 3.17592 3.22953 3.60303 4.12393 4.28579 4.85197 5.10692 5.15399 5.21626 5.40981 5.47119 5.51536 5.67835 5.77112 5.84746 5.94487 6.01916 6.04019 6.15354 6.23325 6.44040 6.44215 6.60949 6.77543 6.86045 7.00306 7.20029 7.46472 7.48234 8.18503 9.07886 10.46440 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.040150 B = 0.006662 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.219564 B = 4202.141054 C = 4561.176623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.030 4.030 8 C -0.450 4.450 9 S 1.350 4.650 10 O -0.898 6.898 11 C -0.827 4.827 12 H 0.080 0.920 13 C 0.119 3.881 14 N -0.855 5.855 15 Si 0.906 3.094 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.272 1.272 19 C -0.117 4.117 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.280 0.720 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 11.207 6.346 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.156 4.156 4 C -0.134 4.134 5 C -0.098 4.098 6 C -0.176 4.176 7 C -0.032 4.032 8 C -0.578 4.578 9 S 1.547 4.453 10 O -0.892 6.892 11 C -0.968 4.968 12 H 0.098 0.902 13 C -0.094 4.094 14 N -0.488 5.488 15 Si 0.731 3.269 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.198 1.198 19 C -0.136 4.136 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.132 0.868 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.575 11.652 5.364 12.841 hybrid contribution -0.643 -2.715 1.271 3.066 sum -1.218 8.937 6.635 11.197 Atomic orbital electron populations 1.20751 0.91814 1.02530 1.01700 1.19797 0.95663 0.93178 1.00578 1.20829 0.94229 0.96897 1.03651 1.20891 0.93972 0.97131 1.01389 1.19728 0.96230 0.92246 1.01579 1.20899 0.91156 1.02501 1.03090 1.19264 0.93024 0.93733 0.97137 1.27403 1.03913 0.98218 1.28268 1.69436 0.93386 1.02461 0.79990 1.92810 1.46623 1.84937 1.64854 1.27564 1.46115 1.25344 0.97751 0.90193 1.24772 0.92933 0.97774 0.93937 1.69907 1.41270 1.39272 0.98358 0.86360 0.79334 0.82116 0.79090 1.19103 1.20272 1.19763 1.20954 0.93908 0.97480 1.01293 0.91736 0.91878 0.91657 0.86777 0.86411 0.90273 0.92219 0.90739 0.87348 0.90631 0.90983 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 36.01 0.36 -1.09 16 2 C -0.09 -1.49 5.88 -104.62 -0.62 -2.11 16 3 C -0.14 -2.00 9.70 -39.58 -0.38 -2.39 16 4 C -0.12 -1.67 9.70 -39.58 -0.38 -2.05 16 5 C -0.10 -1.56 5.88 -104.62 -0.62 -2.18 16 6 C -0.12 -1.57 9.60 36.01 0.35 -1.23 16 7 C -0.03 -0.58 5.14 -104.62 -0.54 -1.12 16 8 C -0.45 -9.27 5.61 36.01 0.20 -9.07 16 9 S 1.35 33.58 12.96 -107.50 -1.39 32.18 16 10 O -0.90 -27.95 17.82 -35.23 -0.63 -28.58 16 11 C -0.83 -22.70 9.39 30.60 0.29 -22.42 16 12 H 0.08 2.12 7.81 -52.49 -0.41 1.71 16 13 C 0.12 3.30 5.46 -17.82 -0.10 3.20 16 14 N -0.86 -24.48 13.15 55.43 0.73 -23.75 16 15 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 C -0.12 -2.25 9.36 -39.59 -0.37 -2.62 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 22 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 23 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 24 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 28 H 0.11 1.93 5.94 -51.92 -0.31 1.62 16 29 H 0.07 1.66 8.09 -51.92 -0.42 1.24 16 30 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 281.32 15.07 4.24 4.24 Total: -1.00 -34.71 281.32 -7.84 -42.55 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.96 Total: 0.71 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: -1.81 Total: -43.07 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.73 Total: -23.75 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.63 Total: -28.58 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 33.58 SS G_CDS: -1.39 Total: 32.18 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.71 -7.84 -42.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526869172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.821 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds