Wall clock time and date at job start Mon Mar 30 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.50702 * 109.46966 * 119.99933 * 2 1 3 5 5 O 1.21433 * 120.00165 * 95.00219 * 4 2 1 6 6 C 1.41028 * 119.99880 * 274.72372 * 4 2 1 7 7 H 1.08002 * 119.99766 * 0.27484 * 6 4 2 8 8 C 1.40459 * 120.00233 * 180.27760 * 6 4 2 9 9 N 1.30524 * 119.99716 * 0.02562 * 8 6 4 10 10 Si 1.86795 * 120.00267 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46983 * 89.99853 * 10 8 6 12 12 H 1.48499 * 109.47218 * 209.99922 * 10 8 6 13 13 H 1.48491 * 109.47227 * 330.00110 * 10 8 6 14 14 C 1.50697 * 109.46954 * 239.99873 * 2 1 3 15 15 C 1.38240 * 119.98804 * 299.72587 * 14 2 1 16 16 C 1.38211 * 120.01071 * 179.73098 * 15 14 2 17 17 C 1.38349 * 119.99210 * 0.54205 * 16 15 14 18 18 Cl 1.73590 * 120.01913 * 179.70634 * 17 16 15 19 19 C 1.38355 * 119.97049 * 359.73283 * 17 16 15 20 20 C 1.38220 * 119.98605 * 359.97438 * 19 17 16 21 21 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47057 * 299.99909 * 1 2 3 23 23 H 1.08994 * 109.47092 * 60.00004 * 1 2 3 24 24 H 0.96999 * 119.99951 * 180.02562 * 9 8 6 25 25 H 1.08000 * 119.99261 * 0.02562 * 15 14 2 26 26 H 1.08011 * 120.00591 * 180.27491 * 16 15 14 27 27 H 1.08002 * 120.01073 * 179.97438 * 19 17 16 28 28 H 1.07999 * 119.99388 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3212 -1.8886 1.1760 6 6 2.1726 -0.0054 2.4439 7 1 1.9157 1.0425 2.4923 8 6 2.6462 -0.6661 3.5893 9 7 2.9571 -1.9324 3.5306 10 14 2.8326 0.2679 5.1962 11 1 1.5686 0.1779 5.9705 12 1 3.9410 -0.3245 5.9874 13 1 3.1363 1.6926 4.9084 14 6 2.0323 -0.7104 -1.2304 15 6 1.7029 -2.0356 -1.4461 16 6 2.1587 -2.6860 -2.5772 17 6 2.9541 -2.0140 -3.4881 18 17 3.5332 -2.8325 -4.9052 19 6 3.2882 -0.6894 -3.2689 20 6 2.8268 -0.0382 -2.1404 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.2839 -2.3887 4.3217 25 1 1.0853 -2.5613 -0.7329 26 1 1.8976 -3.7201 -2.7478 27 1 3.9094 -0.1643 -3.9794 28 1 3.0872 0.9959 -1.9694 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585163817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:24 Heat of formation + Delta-G solvation = -56.052301 kcal Electronic energy + Delta-G solvation = -14272.818917 eV Core-core repulsion = 11699.228752 eV Total energy + Delta-G solvation = -2573.590165 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64507 -38.73497 -37.35361 -34.92953 -34.23580 -31.94186 -30.36711 -28.72155 -25.31730 -23.67466 -23.01423 -20.68321 -18.37531 -17.93584 -17.22888 -16.43933 -16.12737 -15.30139 -15.08187 -14.69518 -14.49379 -14.19807 -14.16595 -13.33237 -13.32297 -13.02811 -12.81979 -12.57192 -12.40379 -12.13303 -12.02518 -11.94651 -11.71930 -11.62032 -10.94194 -9.93274 -9.55081 -9.27853 -8.22778 -7.04620 0.27190 0.44246 1.16915 1.35775 1.38887 1.54300 2.22145 2.23318 2.76553 3.42822 3.84814 4.00120 4.02417 4.30337 4.48317 4.56400 4.61270 4.70659 4.87924 5.03325 5.09951 5.14185 5.22511 5.30235 5.30445 5.44814 5.82938 5.93405 6.02117 6.76602 6.86838 8.32302 8.55643 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.044621 B = 0.005783 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.357345 B = 4840.484541 C = 5034.334092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.352 3.648 5 O -0.581 6.581 6 C -0.562 4.562 7 H 0.085 0.915 8 C 0.029 3.971 9 N -0.790 5.790 10 Si 0.988 3.012 11 H -0.260 1.260 12 H -0.272 1.272 13 H -0.248 1.248 14 C -0.064 4.064 15 C -0.086 4.086 16 C -0.123 4.123 17 C -0.050 4.050 18 Cl -0.071 7.071 19 C -0.113 4.113 20 C -0.115 4.115 21 H 0.037 0.963 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.279 0.721 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.156 0.844 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 4.488 -9.604 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.117 4.117 3 H 0.109 0.891 4 C 0.249 3.751 5 O -0.472 6.472 6 C -0.593 4.593 7 H 0.103 0.897 8 C -0.190 4.190 9 N -0.419 5.419 10 Si 0.807 3.193 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.171 1.171 14 C -0.064 4.064 15 C -0.105 4.105 16 C -0.142 4.142 17 C -0.077 4.077 18 Cl -0.042 7.042 19 C -0.132 4.132 20 C -0.133 4.133 21 H 0.057 0.943 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.127 0.873 26 H 0.156 0.844 27 H 0.174 0.826 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.020 3.691 -9.743 10.469 hybrid contribution 0.144 -0.072 0.796 0.812 sum -0.876 3.620 -8.948 9.692 Atomic orbital electron populations 1.21511 0.92265 1.01208 1.02371 1.20719 0.97979 0.99970 0.93067 0.89083 1.20058 0.78278 0.88141 0.88640 1.90371 1.50677 1.19299 1.86873 1.21314 1.42582 0.99015 0.96404 0.89670 1.27169 0.91837 0.95291 1.04741 1.70088 1.29028 1.11693 1.31127 0.85160 0.78931 0.79455 0.75765 1.18410 1.19712 1.17147 1.20032 0.96798 0.94508 0.95090 1.20946 0.99784 0.94496 0.95237 1.21129 0.98608 1.00713 0.93747 1.20929 1.01659 0.94173 0.90905 1.98326 1.87770 1.79201 1.38889 1.21199 1.00776 0.92629 0.98580 1.21283 0.97326 1.01155 0.93487 0.94334 0.91947 0.90597 0.91085 0.87289 0.84434 0.82618 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.99 71.98 0.65 -3.54 15 2 C -0.10 -4.11 2.78 -12.28 -0.03 -4.14 15 3 H 0.09 3.46 7.86 -2.39 -0.02 3.44 15 4 C 0.35 19.19 6.00 26.37 0.16 19.35 15 5 O -0.58 -36.29 13.06 -3.51 -0.05 -36.34 15 6 C -0.56 -30.40 9.21 23.50 0.22 -30.18 15 7 H 0.09 4.16 7.85 -2.91 -0.02 4.13 15 8 C 0.03 1.52 5.50 85.43 0.47 1.99 15 9 N -0.79 -46.14 11.72 21.91 0.26 -45.88 15 10 Si 0.99 38.97 29.56 68.60 2.03 41.00 15 11 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 12 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 13 H -0.25 -9.16 7.11 99.48 0.71 -8.45 15 14 C -0.06 -2.54 4.65 -19.86 -0.09 -2.63 15 15 C -0.09 -3.51 7.89 22.26 0.18 -3.33 15 16 C -0.12 -4.31 9.83 22.29 0.22 -4.09 15 17 C -0.05 -1.57 6.32 22.32 0.14 -1.43 15 18 Cl -0.07 -1.87 28.96 -2.72 -0.08 -1.95 15 19 C -0.11 -3.34 9.83 22.29 0.22 -3.12 15 20 C -0.11 -3.74 9.67 22.27 0.22 -3.53 15 21 H 0.04 1.46 7.40 -2.39 -0.02 1.45 15 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 24 H 0.28 14.69 8.29 -92.71 -0.77 13.92 15 25 H 0.11 4.92 6.88 -2.91 -0.02 4.90 15 26 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 15 28 H 0.15 4.06 7.94 -2.91 -0.02 4.03 15 Total: -1.00 -66.66 263.92 5.66 -61.00 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.16 Total: 16.82 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 2.34 Total: -34.65 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.26 Total: -45.88 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.05 Total: -36.34 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -66.66 5.66 -61.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585163817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.950 kcal (2) G-P(sol) polarization free energy of solvation -66.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds