Wall clock time and date at job start Mon Mar 30 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50698 * 109.46804 * 239.99888 * 2 1 3 5 5 O 1.21438 * 120.00032 * 269.99432 * 4 2 1 6 6 C 1.41027 * 120.00072 * 90.00472 * 4 2 1 7 7 H 1.08002 * 120.00084 * 359.97438 * 6 4 2 8 8 C 1.40457 * 119.99933 * 179.97438 * 6 4 2 9 9 N 1.30524 * 119.99893 * 0.02562 * 8 6 4 10 10 Si 1.86794 * 119.99891 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47350 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47006 * 120.00201 * 10 8 6 13 13 H 1.48507 * 109.47600 * 240.00151 * 10 8 6 14 14 C 1.50696 * 109.46861 * 119.99921 * 2 1 3 15 15 C 1.38246 * 119.98618 * 240.00049 * 14 2 1 16 16 C 1.38216 * 120.01497 * 180.02562 * 15 14 2 17 17 C 1.38357 * 119.98603 * 359.97165 * 16 15 14 18 18 Cl 1.73599 * 120.01134 * 180.02562 * 17 16 15 19 19 C 1.38347 * 119.97107 * 0.28224 * 17 16 15 20 20 C 1.38217 * 119.98914 * 359.48757 * 19 17 16 21 21 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46759 * 300.00461 * 1 2 3 23 23 H 1.09001 * 109.46784 * 60.00408 * 1 2 3 24 24 H 0.97006 * 119.99743 * 180.02562 * 9 8 6 25 25 H 1.08003 * 119.99321 * 359.97438 * 15 14 2 26 26 H 1.08002 * 120.00776 * 179.97438 * 16 15 14 27 27 H 1.08000 * 120.00661 * 179.71600 * 19 17 16 28 28 H 1.07996 * 119.99353 * 180.23044 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2348 -1.9074 -1.2003 6 6 2.2674 0.0148 -2.4169 7 1 2.0871 1.0794 -2.4438 8 6 2.7361 -0.6473 -3.5635 9 7 2.9535 -1.9339 -3.5312 10 14 3.0468 0.3133 -5.1352 11 1 2.7248 1.7457 -4.9118 12 1 4.4746 0.1818 -5.5215 13 1 2.1886 -0.2239 -6.2216 14 6 2.0323 -0.7104 1.2305 15 6 2.8271 -0.0383 2.1403 16 6 3.2885 -0.6894 3.2688 17 6 2.9544 -2.0140 3.4881 18 17 3.5330 -2.8322 4.9056 19 6 2.1633 -2.6876 2.5745 20 6 1.6986 -2.0340 1.4488 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 3.2775 -2.3910 -4.3230 25 1 3.0882 0.9956 1.9688 26 1 3.9097 -0.1643 3.9793 27 1 1.9060 -3.7229 2.7428 28 1 1.0780 -2.5587 0.7375 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585163818.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:26 Heat of formation + Delta-G solvation = -56.244127 kcal Electronic energy + Delta-G solvation = -14272.134243 eV Core-core repulsion = 11698.535759 eV Total energy + Delta-G solvation = -2573.598484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64503 -38.73896 -37.35494 -34.93584 -34.22633 -31.94208 -30.34614 -28.76534 -25.31859 -23.67283 -23.01256 -20.67686 -18.39869 -17.93165 -17.22938 -16.44000 -16.12183 -15.29972 -15.07923 -14.68743 -14.52684 -14.18605 -14.16845 -13.33832 -13.31510 -13.04025 -12.82617 -12.58125 -12.40610 -12.09695 -12.03241 -11.94133 -11.72602 -11.62069 -10.95876 -9.93370 -9.56714 -9.26988 -8.22845 -7.04964 0.26754 0.43937 1.16778 1.34110 1.38898 1.55704 2.22082 2.22717 2.76268 3.42549 3.84562 4.01054 4.02342 4.29967 4.48409 4.56121 4.61298 4.70269 4.87684 5.03408 5.09068 5.14180 5.22519 5.29834 5.30481 5.44633 5.82752 5.93292 6.02184 6.76392 6.86600 8.32038 8.55413 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.043172 B = 0.005809 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.408635 B = 4819.005739 C = 4996.728475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 H 0.091 0.909 4 C 0.352 3.648 5 O -0.581 6.581 6 C -0.562 4.562 7 H 0.085 0.915 8 C 0.028 3.972 9 N -0.790 5.790 10 Si 0.988 3.012 11 H -0.246 1.246 12 H -0.268 1.268 13 H -0.267 1.267 14 C -0.065 4.065 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.050 4.050 18 Cl -0.071 7.071 19 C -0.123 4.123 20 C -0.088 4.088 21 H 0.038 0.962 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.279 0.721 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.138 0.862 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 4.561 9.704 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.117 4.117 3 H 0.109 0.891 4 C 0.249 3.751 5 O -0.472 6.472 6 C -0.593 4.593 7 H 0.103 0.897 8 C -0.191 4.191 9 N -0.419 5.419 10 Si 0.807 3.193 11 H -0.169 1.169 12 H -0.193 1.193 13 H -0.191 1.191 14 C -0.065 4.065 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.077 4.077 18 Cl -0.042 7.042 19 C -0.142 4.142 20 C -0.106 4.106 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.168 0.832 26 H 0.174 0.826 27 H 0.156 0.844 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.743 3.755 9.828 10.548 hybrid contribution 0.187 -0.075 -0.786 0.811 sum -0.556 3.681 9.042 9.779 Atomic orbital electron populations 1.21514 0.92339 1.01202 1.02333 1.20707 0.97904 0.99967 0.93127 0.89094 1.20058 0.78211 0.88499 0.88331 1.90366 1.52488 1.18292 1.86078 1.21351 1.42935 0.97400 0.97589 0.89686 1.27173 0.92106 0.95483 1.04307 1.70095 1.30023 1.11255 1.30524 0.85111 0.78647 0.79643 0.75882 1.16865 1.19291 1.19141 1.20035 0.96845 0.94526 0.95087 1.21287 0.97322 1.01161 0.93437 1.21203 1.00738 0.92634 0.98576 1.20934 1.01708 0.94161 0.90867 1.98327 1.87798 1.79220 1.38841 1.21133 0.98577 1.00676 0.93792 1.20984 0.99796 0.94521 0.95345 0.94329 0.90555 0.92057 0.91082 0.83221 0.82592 0.84447 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 8.99 71.98 0.65 -3.58 15 2 C -0.10 -4.10 2.80 -12.29 -0.03 -4.13 15 3 H 0.09 3.45 7.83 -2.39 -0.02 3.44 15 4 C 0.35 19.21 5.95 26.37 0.16 19.36 15 5 O -0.58 -36.27 13.08 -3.52 -0.05 -36.31 15 6 C -0.56 -30.41 9.19 23.49 0.22 -30.20 15 7 H 0.08 4.17 7.85 -2.91 -0.02 4.14 15 8 C 0.03 1.50 5.50 85.43 0.47 1.97 15 9 N -0.79 -46.09 11.72 21.91 0.26 -45.83 15 10 Si 0.99 39.00 29.56 68.60 2.03 41.03 15 11 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 12 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 13 H -0.27 -10.13 7.11 99.48 0.71 -9.43 15 14 C -0.06 -2.56 4.69 -19.86 -0.09 -2.65 15 15 C -0.11 -3.71 9.67 22.27 0.22 -3.50 15 16 C -0.11 -3.31 9.83 22.29 0.22 -3.09 15 17 C -0.05 -1.57 6.32 22.32 0.14 -1.43 15 18 Cl -0.07 -1.86 28.96 -2.72 -0.08 -1.94 15 19 C -0.12 -4.30 9.83 22.29 0.22 -4.08 15 20 C -0.09 -3.58 7.94 22.27 0.18 -3.41 15 21 H 0.04 1.48 7.39 -2.39 -0.02 1.46 15 22 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.28 14.64 8.29 -92.70 -0.77 13.87 15 25 H 0.15 4.04 7.95 -2.91 -0.02 4.02 15 26 H 0.16 3.53 8.06 -2.91 -0.02 3.51 15 27 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 28 H 0.11 4.99 6.77 -2.91 -0.02 4.97 15 Total: -1.00 -66.67 263.83 5.66 -61.01 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.16 Total: 16.77 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 2.33 Total: -34.72 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.26 Total: -45.83 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.05 Total: -36.31 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.08 Total: -1.94 kcal Total: -66.67 5.66 -61.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585163818.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.767 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds