Wall clock time and date at job start Mon Mar 30 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48498 * 109.46810 * 269.99445 * 3 2 1 5 5 H 1.48496 * 109.47046 * 29.99493 * 3 2 1 6 6 H 1.48501 * 109.47386 * 149.99765 * 3 2 1 7 7 C 1.37875 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00590 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99615 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.46859 * 179.97438 * 9 7 2 11 11 C 1.81404 * 102.99813 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47022 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47075 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00044 * 179.97438 * 13 12 11 15 15 H 1.09002 * 115.54907 * 4.41757 * 14 13 12 16 16 C 1.53000 * 117.50097 * 218.74632 * 14 13 12 17 17 C 1.53002 * 117.49971 * 150.08844 * 14 13 12 18 18 F 1.39894 * 117.50008 * 215.00586 * 17 14 13 19 19 F 1.39904 * 117.49452 * 359.97438 * 17 14 13 20 20 H 0.97003 * 120.00329 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47159 * 59.99472 * 9 7 2 22 22 H 1.08996 * 109.46879 * 299.99386 * 9 7 2 23 23 H 1.09008 * 109.46880 * 60.00339 * 11 10 9 24 24 H 1.09000 * 109.47156 * 300.00382 * 11 10 9 25 25 H 1.08994 * 109.46929 * 60.00534 * 12 11 10 26 26 H 1.09000 * 109.47530 * 300.00230 * 12 11 10 27 27 H 1.09008 * 117.49673 * 359.97438 * 16 14 13 28 28 H 1.08999 * 117.49959 * 144.99398 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 6 2.2084 -6.6042 0.0008 13 8 1.3590 -7.7534 0.0008 14 6 2.0633 -8.9967 -0.0003 15 1 3.1482 -8.9226 0.0747 16 6 1.4899 -10.1327 -0.8499 17 6 1.3884 -10.1916 0.6763 18 9 2.2108 -11.1052 1.3440 19 9 0.1292 -9.9829 1.2492 20 1 -0.4851 0.8400 -0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 0.7221 -5.3237 -0.8886 24 1 0.7226 -5.3231 0.8915 25 1 2.8381 -6.6174 0.8903 26 1 2.8370 -6.6175 -0.8896 27 1 0.5752 -9.9317 -1.4077 28 1 2.1976 -10.8058 -1.3338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594903710.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:40 Heat of formation + Delta-G solvation = -121.407116 kcal Electronic energy + Delta-G solvation = -14005.803542 eV Core-core repulsion = 11013.026650 eV Total energy + Delta-G solvation = -2992.776892 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.058 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.82426 -47.50627 -38.63101 -34.99164 -33.18501 -30.77585 -28.57869 -23.69391 -23.00435 -22.48780 -22.43032 -18.36662 -17.42081 -16.51044 -16.39868 -16.12531 -15.80617 -15.23532 -14.42078 -14.31100 -14.17228 -13.80260 -13.54661 -13.19757 -12.82718 -12.52427 -12.29587 -12.18213 -11.55570 -11.34827 -10.90070 -10.75004 -10.52248 -10.05407 -9.62134 -9.54217 -8.97052 -8.64761 -6.79627 -6.22546 -4.27386 2.18814 2.73555 2.85398 3.24576 3.30106 3.32934 3.36895 3.76484 4.00865 4.31948 4.33048 4.48925 4.87228 5.04988 5.09013 5.14626 5.18090 5.45466 5.46111 5.87141 6.02499 6.81847 7.04670 7.07052 7.71438 7.96176 8.74266 9.35902 10.88688 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.077038 B = 0.003586 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.367812 B = 7805.945785 C = 7953.328196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.095 3.905 10 S -0.297 6.297 11 C -0.095 4.095 12 C 0.081 3.919 13 O -0.341 6.341 14 C 0.031 3.969 15 H 0.136 0.864 16 C -0.182 4.182 17 C 0.187 3.813 18 F -0.162 7.162 19 F -0.153 7.153 20 H 0.266 0.734 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 -18.382 -1.377 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.554 4.554 8 H 0.086 0.914 9 C -0.051 4.051 10 S -0.071 6.071 11 C -0.243 4.243 12 C 0.004 3.996 13 O -0.259 6.259 14 C -0.030 4.030 15 H 0.154 0.846 16 C -0.220 4.220 17 C 0.150 3.850 18 F -0.143 7.143 19 F -0.134 7.134 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.147 0.853 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.217 -18.230 -1.327 18.758 hybrid contribution -0.906 0.672 0.211 1.148 sum 3.310 -17.558 -1.116 17.902 Atomic orbital electron populations 1.69952 1.06155 1.27438 1.49440 1.24973 0.94998 0.99328 0.94599 0.86322 0.79710 0.82090 0.78359 1.20318 1.20945 1.19533 1.20662 0.93495 0.88629 1.52569 0.91389 1.21080 0.93446 0.90275 1.00346 1.86508 1.20852 1.01627 1.98148 1.23096 1.01078 0.94502 1.05597 1.22427 0.92335 0.82991 1.01813 1.87932 1.32788 1.11811 1.93384 1.24003 0.96997 0.82835 0.99127 0.84631 1.24924 1.05976 0.99948 0.91115 1.20800 0.78852 0.94893 0.90426 1.93028 1.70982 1.67573 1.82692 1.93046 1.39294 1.94793 1.86255 0.92422 0.94405 0.94384 0.89905 0.89892 0.91728 0.91616 0.85252 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 15 3 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.51 -14.37 9.13 -34.44 -0.31 -14.69 15 8 H 0.07 1.89 7.71 -52.49 -0.40 1.49 15 9 C 0.10 2.46 5.70 36.01 0.21 2.66 15 10 S -0.30 -6.29 21.66 -107.50 -2.33 -8.61 15 11 C -0.09 -1.60 6.31 37.16 0.23 -1.36 15 12 C 0.08 1.10 5.82 37.16 0.22 1.31 15 13 O -0.34 -4.55 10.48 -35.23 -0.37 -4.92 15 14 C 0.03 0.31 6.43 -26.73 -0.17 0.14 15 15 H 0.14 1.01 7.93 -51.93 -0.41 0.60 15 16 C -0.18 -1.42 10.45 -26.70 -0.28 -1.70 15 17 C 0.19 2.03 5.26 -26.69 -0.14 1.88 15 18 F -0.16 -1.79 17.60 2.25 0.04 -1.75 15 19 F -0.15 -2.06 17.47 2.25 0.04 -2.02 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.04 1.01 8.14 -51.92 -0.42 0.59 15 22 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.08 1.39 8.14 -51.92 -0.42 0.97 15 24 H 0.08 1.42 8.14 -51.92 -0.42 1.00 15 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.13 0.98 8.14 -51.92 -0.42 0.56 15 28 H 0.13 0.65 8.14 -51.93 -0.42 0.23 15 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -29.85 274.99 -6.44 -36.29 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -3.33 Total: -4.16 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.35 Total: -10.03 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.37 Total: -4.92 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -2.33 Total: -8.61 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.85 -6.44 -36.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903710.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.120 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds