Wall clock time and date at job start Mon Mar 30 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48498 * 109.46810 * 269.99445 * 3 2 1 5 5 H 1.48496 * 109.47046 * 29.99493 * 3 2 1 6 6 H 1.48501 * 109.47386 * 149.99765 * 3 2 1 7 7 C 1.37875 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00590 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99615 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.46859 * 179.97438 * 9 7 2 11 11 C 1.81404 * 102.99813 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47022 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47075 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00044 * 179.97438 * 13 12 11 15 15 H 1.09002 * 115.54907 * 4.41757 * 14 13 12 16 16 C 1.53000 * 117.50097 * 218.74632 * 14 13 12 17 17 C 1.53002 * 117.49971 * 150.08844 * 14 13 12 18 18 F 1.39894 * 117.50008 * 215.00586 * 17 14 13 19 19 F 1.39904 * 117.49452 * 359.97438 * 17 14 13 20 20 H 0.97003 * 120.00329 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47159 * 59.99472 * 9 7 2 22 22 H 1.08996 * 109.46879 * 299.99386 * 9 7 2 23 23 H 1.09008 * 109.46880 * 60.00339 * 11 10 9 24 24 H 1.09000 * 109.47156 * 300.00382 * 11 10 9 25 25 H 1.08994 * 109.46929 * 60.00534 * 12 11 10 26 26 H 1.09000 * 109.47530 * 300.00230 * 12 11 10 27 27 H 1.09008 * 117.49673 * 359.97438 * 16 14 13 28 28 H 1.08999 * 117.49959 * 144.99398 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 6 2.2084 -6.6042 0.0008 13 8 1.3590 -7.7534 0.0008 14 6 2.0633 -8.9967 -0.0003 15 1 3.1482 -8.9226 0.0747 16 6 1.4899 -10.1327 -0.8499 17 6 1.3884 -10.1916 0.6763 18 9 2.2108 -11.1052 1.3440 19 9 0.1292 -9.9829 1.2492 20 1 -0.4851 0.8400 -0.0004 21 1 0.6246 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 0.7221 -5.3237 -0.8886 24 1 0.7226 -5.3231 0.8915 25 1 2.8381 -6.6174 0.8903 26 1 2.8370 -6.6175 -0.8896 27 1 0.5752 -9.9317 -1.4077 28 1 2.1976 -10.8058 -1.3338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594903710.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:40 Heat of formation + Delta-G solvation = -139.115718 kcal Electronic energy + Delta-G solvation = -14006.571444 eV Core-core repulsion = 11013.026650 eV Total energy + Delta-G solvation = -2993.544794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.058 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.67021 -48.38206 -39.55290 -35.83733 -35.30683 -31.98913 -30.69748 -25.50977 -23.98753 -23.66232 -23.28340 -19.23633 -18.69104 -18.21781 -17.36399 -17.07184 -17.02170 -16.84151 -16.17811 -15.29304 -15.05957 -14.77828 -14.66932 -14.57434 -14.43889 -13.99242 -13.89354 -13.58149 -12.74963 -12.68770 -12.50324 -12.34730 -12.04011 -11.60676 -11.30357 -10.80050 -10.75562 -10.41581 -8.53858 -8.34347 -6.48205 0.71955 1.41343 1.42644 1.54822 1.87331 1.93682 2.12461 2.36341 2.44774 3.00592 3.30915 3.57026 3.63163 3.85042 4.00281 4.14897 4.34656 4.60651 4.64734 4.72108 4.81953 4.91096 4.92600 5.55785 5.85431 5.89129 6.59540 7.20301 8.77758 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.077038 B = 0.003586 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.367812 B = 7805.945785 C = 7953.328196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.092 3.908 10 S -0.286 6.286 11 C -0.087 4.087 12 C 0.091 3.909 13 O -0.362 6.362 14 C 0.021 3.979 15 H 0.164 0.836 16 C -0.149 4.149 17 C 0.158 3.842 18 F -0.167 7.167 19 F -0.176 7.176 20 H 0.271 0.729 21 H 0.017 0.983 22 H 0.015 0.985 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 -19.042 -2.108 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.056 4.056 10 S -0.060 6.060 11 C -0.236 4.236 12 C 0.014 3.986 13 O -0.281 6.281 14 C -0.039 4.039 15 H 0.181 0.819 16 C -0.187 4.187 17 C 0.121 3.879 18 F -0.147 7.147 19 F -0.157 7.157 20 H 0.080 0.920 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.150 0.850 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.687 -18.909 -2.060 19.853 hybrid contribution -1.398 0.734 0.450 1.642 sum 4.289 -18.174 -1.610 18.743 Atomic orbital electron populations 1.70063 1.07777 1.28651 1.49969 1.25958 0.95904 1.03218 0.93751 0.85225 0.78438 0.77257 0.78817 1.19305 1.20193 1.18804 1.20992 0.93577 0.89994 1.53020 0.91595 1.20784 0.94083 0.92542 0.98158 1.86187 1.20089 1.01659 1.98085 1.23122 1.00813 0.94224 1.05407 1.22238 0.91476 0.81718 1.03123 1.87874 1.33720 1.12790 1.93700 1.24391 0.98215 0.81432 0.99854 0.81888 1.25062 1.06496 0.98291 0.88804 1.21270 0.78274 0.96007 0.92331 1.93013 1.70948 1.67703 1.83060 1.92991 1.40828 1.95022 1.86860 0.92047 0.96500 0.96714 0.89822 0.90484 0.90896 0.89810 0.84951 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.29 21.45 0.28 -54.15 15 2 C 0.01 0.70 5.46 84.65 0.46 1.16 15 3 Si 0.98 43.22 29.54 68.60 2.03 45.24 15 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 7 C -0.54 -30.43 9.13 25.60 0.23 -30.19 15 8 H 0.07 3.68 7.71 -2.91 -0.02 3.65 15 9 C 0.09 4.87 5.70 71.24 0.41 5.28 15 10 S -0.29 -12.02 21.66 -56.49 -1.22 -13.25 15 11 C -0.09 -2.89 6.31 71.98 0.45 -2.43 15 12 C 0.09 2.28 5.82 71.98 0.42 2.70 15 13 O -0.36 -8.99 10.48 -148.98 -1.56 -10.55 15 14 C 0.02 0.37 6.43 30.60 0.20 0.56 15 15 H 0.16 1.86 7.93 -2.39 -0.02 1.84 15 16 C -0.15 -1.85 10.45 30.62 0.32 -1.53 15 17 C 0.16 3.17 5.26 30.62 0.16 3.33 15 18 F -0.17 -3.43 17.60 44.97 0.79 -2.64 15 19 F -0.18 -4.70 17.47 44.97 0.79 -3.91 15 20 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 21 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 22 H 0.01 0.82 8.14 -2.39 -0.02 0.80 15 23 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 24 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 27 H 0.13 1.63 8.14 -2.38 -0.02 1.61 15 28 H 0.17 0.89 8.14 -2.39 -0.02 0.87 15 Total: -1.00 -65.03 274.99 4.91 -60.12 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.15 Total: 0.27 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 2.65 Total: -21.13 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.28 Total: -54.15 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.56 Total: -10.55 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.58 Total: -6.55 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -12.02 SS G_CDS: -1.22 Total: -13.25 kcal Total: -65.03 4.91 -60.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594903710.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.999 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds